RNA id: TU2594434


Basic Information

Item Value
RNA id TU2594434
length 490
lncRNA type intronic
GC content 0.40
exon number 1
gene id G2267946
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 27927525 ~ 27928014 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATATAACAGTGAGAAAGAGAtggaataaagagagagataacagtGAGGAACAgagggaataaagagagagataacagtgaggaagagagggaataaagagagagataacagtGAGGAACAgagggaataaagagagagatatcagtgagaaagagagggaataaaGAGAGATATAACAGTGAGGAACAgagggaataaagagagagataacagtGAGGAACAGAGCGAATAAAGAGAGATAacagtgaggaagagagggaataaagagagagataacagtGAGGAACAgagggaataaagagagagataacagtgaggaagagagggaataaagagagagataacagtgaggaagagagggaataaagagagagataacagtGAGGAACAgagggaataaagagagagataacagtgaggaagagagggaataaagagagagataacagtGAGGAACAGAGGGAATAAAGAGAGTGATAACAGTGAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2594431 lncRNA upstream 3770 27917215 ~ 27923755 (+) True G2267943
TU2594426 lncRNA upstream 19107 27906935 ~ 27908418 (+) True LOC110504909
TU2594422 lncRNA upstream 27695 27899471 ~ 27899830 (+) True G2267935
TU2594368 lncRNA upstream 101898 27818248 ~ 27825627 (+) True G2267883
TU2594356 lncRNA upstream 132079 27793509 ~ 27795446 (+) True G2267872
TU2594442 lncRNA downstream 25132 27953146 ~ 27954152 (+) True LOC110504911
TU2594443 lncRNA downstream 26596 27954610 ~ 27954885 (+) True G2267955
TU2594450 lncRNA downstream 28036 27956050 ~ 27956434 (+) True G2267962
TU2594409 lncRNA downstream 33888 27961902 ~ 27963378 (+) True G2267924
TU2594407 lncRNA downstream 79014 28007028 ~ 28010319 (+) True LOC110504914
XM_021583781.2 mRNA upstream 19095 27902697 ~ 27908430 (+) False LOC110504909
XR_005041164.1 mRNA upstream 19095 27902697 ~ 27908430 (+) False LOC110504909
XR_005041165.1 mRNA upstream 19095 27902903 ~ 27908430 (+) False LOC110504909
XR_005041166.1 mRNA upstream 19095 27902903 ~ 27908430 (+) False LOC110504909
LOC110504908 mRNA upstream 31052 27893486 ~ 27896473 (+) True LOC110504908
XM_021583783.2 mRNA downstream 25098 27953112 ~ 27954148 (+) False LOC110504911
XM_021583784.2 mRNA downstream 30724 27958738 ~ 27961819 (+) True LOC110504912
XM_036969630.1 mRNA downstream 59938 27987952 ~ 28010322 (+) False LOC110504914
XM_036970092.1 mRNA downstream 126374 28054388 ~ 28056425 (+) True LOC118946038
XM_021583792.2 mRNA downstream 129398 28057412 ~ 28065727 (+) False LOC110504919
TU2593017 other upstream 991636 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 1306577 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 1555042 26361992 ~ 26372483 (+) True LOC110504416
TU2592623 other upstream 1635864 26289825 ~ 26291661 (+) False LOC118946064
TU2594875 other downstream 838863 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 968741 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 3248876 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 4935422 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 5488076 33416090 ~ 33421685 (+) True LOC110505056

Expression Profile