RNA id: TU2594450


Basic Information

Item Value
RNA id TU2594450
length 385
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G2267962
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 27956050 ~ 27956434 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctatctctctgatttggtcctgccgtacatacctacacgtacactacggtcacaagacgcaggcctcctaattgtccctagaatttctaagcaaacagctggaggcagggctttctcctatagagctcaatttttatggaatggtctgcctacccatgtgagagacgcaaactcggtctcaacctttaagtctctactgaagactcatctcttcagtgggtcatatgattgagtgtagtctggcccaggagtgtgaaggtgaacggaaaggctctggagcaacgaaccgcccttgctgtctctgcctggccggttcccctctttccactgggattctctgcctctaaccctattacaggggctgagtcactggcttactagggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2594443 lncRNA upstream 1165 27954610 ~ 27954885 (+) True G2267955
TU2594442 lncRNA upstream 1898 27953146 ~ 27954152 (+) True LOC110504911
TU2594434 lncRNA upstream 28036 27927525 ~ 27928014 (+) True G2267946
TU2594431 lncRNA upstream 32295 27917215 ~ 27923755 (+) True G2267943
TU2594426 lncRNA upstream 47632 27906935 ~ 27908418 (+) True LOC110504909
TU2594409 lncRNA downstream 5468 27961902 ~ 27963378 (+) True G2267924
TU2594407 lncRNA downstream 50594 28007028 ~ 28010319 (+) True LOC110504914
TU2594410 lncRNA downstream 57692 28014126 ~ 28014875 (+) True G2267925
TU2594417 lncRNA downstream 64626 28021060 ~ 28021789 (+) True G2267930
TU2594466 lncRNA downstream 68533 28024967 ~ 28025187 (+) True G2267978
XM_021583783.2 mRNA upstream 1902 27953112 ~ 27954148 (+) False LOC110504911
XM_021583781.2 mRNA upstream 47620 27902697 ~ 27908430 (+) False LOC110504909
XM_021583784.2 mRNA downstream 2304 27958738 ~ 27961819 (+) True LOC110504912
XM_036969630.1 mRNA downstream 31518 27987952 ~ 28010322 (+) False LOC110504914
XM_036970092.1 mRNA downstream 97954 28054388 ~ 28056425 (+) True LOC118946038
XM_021583792.2 mRNA downstream 100978 28057412 ~ 28065727 (+) False LOC110504919
XM_021583793.2 mRNA downstream 100978 28057412 ~ 28065727 (+) True LOC110504919
TU2593017 other upstream 1020161 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 1335102 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 1583567 26361992 ~ 26372483 (+) True LOC110504416
TU2592623 other upstream 1664389 26289825 ~ 26291661 (+) False LOC118946064
TU2594875 other downstream 810443 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 940321 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 3220456 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 4907002 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 5459656 33416090 ~ 33421685 (+) True LOC110505056

Expression Profile