RNA id: TU2594410


Basic Information

Item Value
RNA id TU2594410
length 395
lncRNA type antisense_over
GC content 0.49
exon number 3
gene id G2267925
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 28014126 ~ 28014875 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctttGTAGAGGGGCGGGTTTTCCTTGTTCACTGTGAATAGGAACATGTCTATGAAGTGGATGAGGATGCTGGGGGTGAAGTTAGAGTGGGCCGTGTCAAAGGCCAGCCACTTGAAGATGACCATGAAGACCAGGTAACCAAACAGACACAGCATGAAGAACAGCTCTGGGATCAGTACCAGGAATACACTGCTCAACTGGTTGAAATgtTTGTAGTTGAAGAAGGACAGACAGACTCCGAAGGTCATGTGGATCACCCCGATGATGACGGACATCTTCATCTTGTAGGAGTTAAGGAATGTCAGGTGGTTGTTGGACAGACCCCAGATCGGGTCGATGCCAAAAGGATAGGGTCCTGTAAAAACCCCAGTGATGTTCGGGTCCAGGGACAGGAAG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2594407 lncRNA upstream 3807 28007028 ~ 28010319 (+) True LOC110504914
TU2594409 lncRNA upstream 50748 27961902 ~ 27963378 (+) True G2267924
TU2594450 lncRNA upstream 57692 27956050 ~ 27956434 (+) True G2267962
TU2594443 lncRNA upstream 59241 27954610 ~ 27954885 (+) True G2267955
TU2594442 lncRNA upstream 59974 27953146 ~ 27954152 (+) True LOC110504911
TU2594417 lncRNA downstream 6185 28021060 ~ 28021789 (+) True G2267930
TU2594466 lncRNA downstream 10092 28024967 ~ 28025187 (+) True G2267978
TU2594408 lncRNA downstream 14830 28029705 ~ 28030911 (+) True G2267923
TU2594486 lncRNA downstream 53750 28068625 ~ 28070758 (+) True G2267994
TU2594491 lncRNA downstream 58651 28073526 ~ 28078028 (+) True G2267999
XM_036969630.1 mRNA upstream 3804 27987952 ~ 28010322 (+) False LOC110504914
XM_021583784.2 mRNA upstream 52307 27958738 ~ 27961819 (+) True LOC110504912
XM_021583783.2 mRNA upstream 59978 27953112 ~ 27954148 (+) False LOC110504911
XR_005041164.1 mRNA upstream 105696 27902697 ~ 27908430 (+) False LOC110504909
XM_036970092.1 mRNA downstream 39513 28054388 ~ 28056425 (+) True LOC118946038
XM_021583792.2 mRNA downstream 42537 28057412 ~ 28065727 (+) False LOC110504919
XM_021583793.2 mRNA downstream 42537 28057412 ~ 28065727 (+) True LOC110504919
XM_036970093.1 mRNA downstream 140546 28155421 ~ 28163913 (+) True trmt12
XM_021583799.2 mRNA downstream 155586 28170461 ~ 28188340 (+) False sytl4
TU2593017 other upstream 1078237 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 1393178 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 1641643 26361992 ~ 26372483 (+) True LOC110504416
TU2592623 other upstream 1722465 26289825 ~ 26291661 (+) False LOC118946064
TU2594875 other downstream 752002 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 881880 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 3162015 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 4848561 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 5401215 33416090 ~ 33421685 (+) True LOC110505056

Expression Profile