RNA id: TU2594417


Basic Information

Item Value
RNA id TU2594417
length 668
lncRNA type intronic
GC content 0.36
exon number 2
gene id G2267930
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 28021060 ~ 28021789 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGTGGATCATCAGCTTCCTTAAAAAAACTAAGTTATGGATTGTTTTAAAATCGCATTGCTGACAGTCGTAAGGAAAGGCAACGCACGCAGCAAAGACCAAATACATGATTGTTGAGTTGCGTTCAGTCAACAGTAGAGAACCAGCCAGGCATATCGCAATATGCAAATGGTTATTGCTGTAAAGAGAAGAAAATGAAAAGAATATTCTGTATTTTAGATGTAAAAATTCTCAATTTAACCGAGCGAACAACAGTATAGTCTATTTTATTGGCACCAACAGAGAGCATCACCAATTTCCCCAACCACTCTTTATCATTGTTGGGTCAGTACCACTTAAAAGTTTGTTTTTGGACAACTTCCCCAACCACTCTTTATCATTGTTGGGTCAGTACCACTTAAAAGTTTGTTTTTGGACAATTTCCTCCTCCAGTTTAGATGGATGAAATATTCCATTTGTCTTCCCTTGTCGTATTGTATGTTTATATTGATCCATTTGTCTTCCCTTGTCGTATTGTATGTTTATATTGATCCATTTGTCTTCCCTTGTCGTATTGTATGTTTATATTGATCCATTTGTCTTCCCTTGTCGTATTGTATGTTTATATTGATCCATTTGTCTTCCCTTGTCGTATTGTATGTTTATATTGATCCATTTGTCAGGTTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2594410 lncRNA upstream 6185 28014126 ~ 28014875 (+) True G2267925
TU2594407 lncRNA upstream 10741 28007028 ~ 28010319 (+) True LOC110504914
TU2594409 lncRNA upstream 57682 27961902 ~ 27963378 (+) True G2267924
TU2594450 lncRNA upstream 64626 27956050 ~ 27956434 (+) True G2267962
TU2594443 lncRNA upstream 66175 27954610 ~ 27954885 (+) True G2267955
TU2594466 lncRNA downstream 3178 28024967 ~ 28025187 (+) True G2267978
TU2594408 lncRNA downstream 7916 28029705 ~ 28030911 (+) True G2267923
TU2594486 lncRNA downstream 46836 28068625 ~ 28070758 (+) True G2267994
TU2594491 lncRNA downstream 51737 28073526 ~ 28078028 (+) True G2267999
TU2594542 lncRNA downstream 104952 28126741 ~ 28127553 (+) True G2268035
XM_036969630.1 mRNA upstream 10738 27987952 ~ 28010322 (+) False LOC110504914
XM_021583784.2 mRNA upstream 59241 27958738 ~ 27961819 (+) True LOC110504912
XM_021583783.2 mRNA upstream 66912 27953112 ~ 27954148 (+) False LOC110504911
XR_005041165.1 mRNA upstream 112630 27902903 ~ 27908430 (+) False LOC110504909
XM_036970092.1 mRNA downstream 32599 28054388 ~ 28056425 (+) True LOC118946038
XM_021583792.2 mRNA downstream 35623 28057412 ~ 28065727 (+) False LOC110504919
XM_021583793.2 mRNA downstream 35623 28057412 ~ 28065727 (+) True LOC110504919
XM_036970093.1 mRNA downstream 133632 28155421 ~ 28163913 (+) True trmt12
XM_021583799.2 mRNA downstream 148672 28170461 ~ 28188340 (+) False sytl4
TU2593017 other upstream 1085171 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 1400112 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 1648577 26361992 ~ 26372483 (+) True LOC110504416
TU2592623 other upstream 1729399 26289825 ~ 26291661 (+) False LOC118946064
TU2594875 other downstream 745088 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 874966 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 3155101 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 4841647 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 5394301 33416090 ~ 33421685 (+) True LOC110505056

Expression Profile