RNA id: TU2594408


Basic Information

Item Value
RNA id TU2594408
length 1106
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G2267923
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 28029705 ~ 28030911 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccactttgacattattgggtattgtgtcgGCCAATGACAAAAACAatataaatgtaatccattttaaattcggGCTGTAATaactaaaatgtagaaaaagtcaaggggtgtgaataatttccaaatgcactgtaaagaGCACACTGAACCTTTGTGATCAAAGTCACATTGGTGCCTCTGACAGGCTGAATCGACAACTGGAGGCATATACAATACATTCCATTGATCAAGCAAATAGCTGGCTGTTTTTACATAAAACACTTCATTTATTGAGGTGTAAAAAGTGTGGAAGATAATTCAAGGGATTAAGTAGCCAGTAGACCTGACCTGCTTGTTTACAGCTGTACTAGGGTCAGACAGCATTTCTGTGTTGTTTAAGACACTGCGGAGCAGGTGCCAGATATGGCTTGGAAAACATCTCAATCCAGGGATGAGAAATGCATTGTACTCTGAATTGTCCCATTATCCCGACTGCTACTTCTTCCGGAAAACTGTCCTTTCCGTCCTCATGCTAGGTAGCAGAAGTTACAGCAGTGTTCAATCTCTGTGGTGTCTTAATTTACACAAGAATGCTGTCCAACCCTGTAAGCAAGCTGGTCAGATCGCCTGGCTAAGAATGAACACAATACACAGAATTGGCATATACAATGTGACAGAGCTTAgttaaaacaaaaatacaatttcaacAGAAGATTACTGTTGGTCTAACCAGCAAAGGAGAACAGAGATTTGGGGAGTTATTTACGGAGAATAAATGAAGGGGAAACCTAAATACTTCAGCACCTGTTCCTCCACCCACCCTGGGATCCTAAATAACTATagaacaaatgtttttttaaatgctaAGACCATCAACTGCTGGTAAATGTGACTGCCTAGGCCAGTCAACCCACTACATTCGGATCACTGGTCCATATTTCTCAAACCCCAAACCCGACTGCAGCCGAGTCAAATTTGTCACACAGGACCTTATCCCCTCTTCCACTTCCTCTATCTGTTTGTCTGTACTAATTTACAGGCTGTAGAACTTAAGGCTCCTGTCCATTCCCGCGGAGGAAAGGAACTGAGCATTGTCTCCAAACGCCACGCCGGTCACAAGGCCAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2594466 lncRNA upstream 4518 28024967 ~ 28025187 (+) True G2267978
TU2594417 lncRNA upstream 7916 28021060 ~ 28021789 (+) True G2267930
TU2594410 lncRNA upstream 14830 28014126 ~ 28014875 (+) True G2267925
TU2594407 lncRNA upstream 19386 28007028 ~ 28010319 (+) True LOC110504914
TU2594409 lncRNA upstream 66327 27961902 ~ 27963378 (+) True G2267924
TU2594486 lncRNA downstream 37714 28068625 ~ 28070758 (+) True G2267994
TU2594491 lncRNA downstream 42615 28073526 ~ 28078028 (+) True G2267999
TU2594542 lncRNA downstream 95830 28126741 ~ 28127553 (+) True G2268035
TU2594545 lncRNA downstream 104630 28135541 ~ 28135887 (+) True G2268036
TU2594546 lncRNA downstream 105249 28136160 ~ 28136441 (+) True G2268037
XM_036969630.1 mRNA upstream 19383 27987952 ~ 28010322 (+) False LOC110504914
XM_021583784.2 mRNA upstream 67886 27958738 ~ 27961819 (+) True LOC110504912
XM_021583783.2 mRNA upstream 75557 27953112 ~ 27954148 (+) False LOC110504911
XR_005041165.1 mRNA upstream 121275 27902903 ~ 27908430 (+) False LOC110504909
XM_036970092.1 mRNA downstream 23477 28054388 ~ 28056425 (+) True LOC118946038
XM_021583792.2 mRNA downstream 26501 28057412 ~ 28065727 (+) False LOC110504919
XM_021583793.2 mRNA downstream 26501 28057412 ~ 28065727 (+) True LOC110504919
XM_036970093.1 mRNA downstream 124510 28155421 ~ 28163913 (+) True trmt12
XM_021583799.2 mRNA downstream 139550 28170461 ~ 28188340 (+) False sytl4
TU2593017 other upstream 1093816 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 1408757 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 1657222 26361992 ~ 26372483 (+) True LOC110504416
TU2592623 other upstream 1738044 26289825 ~ 26291661 (+) False LOC118946064
TU2594875 other downstream 735966 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 865844 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 3145979 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 4832525 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 5385179 33416090 ~ 33421685 (+) True LOC110505056

Expression Profile