RNA id: TU2594593


Basic Information

Item Value
RNA id TU2594593
length 3695
lncRNA type intronic
GC content 0.40
exon number 1
gene id G2268083
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 28296173 ~ 28299867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaccgatttgccgatttttgtttttttacacctttttataagaaattaatgttagcaggcactATTAACTAagtatgcaggtttaaaaatatatacttctgtattgattttaaagaaaggcattgatgtttatggttaggtacattggtgcaagacagtgctttttttgcaaatgcgcttgttaaatcatcatcatcatcgtttgtcgattatatgcaacgcaggacacgctagataaactagtaatatcatcaaccatgtgtagttaactagtgatcatgttaagatttattgttttttataagataagtttaatactagctagcaacttaccttggcttcttgctgccctcaCGTAACAGGTAGTctctcgtggagtgcaatgtaaggcaggtggttagagcattggactagtaaccggatgTTTGCAAAAaacgaatcccagagctgacaaggtaaaaatctgtcattctgcccctgaacatggcagttaacccacctttcctaggccgtcattgaaaataagaatgtgttcttaactgacttgcctagctataatatagggaaattgtgtcacttctcttgcgttctgtgcaagcagtcagggtatatgcagcagtttgggccgcctggctcattgcaaactgtgtaaagtccatttattcctaacaatgGCAGTAATTAATGTTCCATAATTGtccataattatgacataacattgtaggttgtacaatgtaacagcaatatttaaacttagggatgccatctgtTAGATAAAATTCGGaacactgaaagaataaacgttttgttttctgaatGATAGTTTGCGGATTCAACCATTTTAATGACCAAagactcgtatttctgtgtgttattatgttataattaagtctatgatttgatagagcagtctgactgagcgatggtaggcagcagcaggctcgtaagcattcattcaaacagtactttcctacgtttgccagcagctattgtgctgtttatgacttcaagcctatcaactcccgagattaggctggtgtaaccgatgtgaaatggccagctagttagcggggtgcgcgctaatagcgtttcaaacgtcactcgctctgagacttggagtagttgttccccttgctctgcaaggttaacgctgctttgagggtggctgttttcgatgtgttcctggttcgagcccaggtaggagcgaggagagggacagaagctatactgttacactggcaatactaaagtgcctataagaacatccaatcgtcaaaggtatatgaaatacaaatggtatagagagaaatagtcctgtaattcctataataactataacctaaaacttcttacctgggaatattgaagactcgtgttaaaggaaccaccagctttcatatgttctcatgttctgagcaaggaacttaaacgtcaGATttattacatggcacatattgcacttttactttcttctccaacactttgtttttgcattatttaaaccaaattgaacatgtttcattatttatgaggctaaattgattttattgatgtattatattaagttaaaataagtgttcattcagtattgttgtaattgtcattattacaaatacattttaaaaattggccgattaatcggtatcgagtttttttggtcctccaataatcagtatcggcgttgaaaaaatcatattcggtcgacctctaatctccaaggcattcctagtcgatcaccaaacatttctgtaaaaaaaacaacgataaagccttgcgttcctatttttttaaattaattttgcactgttggtggtaggtgcagcCCTAGTGCCGGAAAgacaaagtgttcccatttttaaccatttcatgtgtctgaaggaaTAACTCCACCTACCCAGCAGGCCCAGAGAACAAATCAATTGCACCTATAGGCCTACCTTGAacgcacagcaaagttgatactgtgagatttcaaaacttttaaaaccatgacgaGGAAGACTCCACggatacagcaaagagctgctgttttatgtgtaagttcatgtttaagttgttattcagcactgtaAACACTTTGTTCAACACCTTTTTAAGCCATAAAATGTGAGTTCTCCCTACTTCCAcacgctacaaccagcactgtatatatcaatgatgtcactcttgctgctggtgtcacgttctgaccttagttcctttgttatgtctttgttttagtttggtgaGTTGGgatgggtagtctatgttcttttttctatgttgtggttttgtgtttggcctggtatggttctcaatcagaggcaggtgtcgttcattgtctctgattgaaaatcatacttaagtagccttttcccacctgtgttttgtgggtgattatttcctgtttagtgttttttccaTTCACCTTACGGGACTGGTCGtttgtcgtttattgttttgtccaGTGTTCAGTTATTTTACtaaaaatatgaacacttaccacgctgcgctttggtcctcaccttcttccaccacagacgatcgttacagctggtgattctctgatccacctctacgcagacaacaccattctgtatacatctggcccttctttggacactgtgttaacaaacctccaaacgagcttcaacgccatacaacactccttccgtggcctacaACTGCTTTTAATGAAATGCTAGTagaactaagtgcatgctcttgaaccgattgctgcccgcacctgcccgcccgactagcatcactactctggacggttctgacctagaatatgtggacaactacaaatacctaggtgtctggttagactgtaaactctccttccaggctcacattaagcatctccaatccaaaattaaatctagaatcggcttcctattttgcaacaaagcctccttcgctcatgctgccaaacataccctcgtaaaactgattaTCCTATCCTCAAATTTGGCGATGTAATtgacaaaatagcccccaacactctactcagcaaactggatgtagtctatcacagtgccatccgttttgtcaccaaagccccatatacaacccactaatgtgacctgtatgctctcgttggcgggccctcactacatatccgtcgccaaacccactggctccaggttatctataagtctttgctaggtaaagccctgccttatctcagctcactggtcaccatagcagcacccacccgtagcatgcgctccagcaggtatattgcactggtcatccccaaagccaacacttcctttggccacctttccttccagttttctgctgccaatgactggaatgaattgcaaaaatcaattatatctccctctctaactttaagcatcagctgctTACCAAACaatgtacacagccaatctgtaaatagcacgtccaactacctcatccccatattattacttaccctctcgATCTTTTGTACCACAGTATCTCTAATTGcacatcatcttctgcacatatctatcactccagtattaatgttaaattgtaattatttcgcctctatggcctatttattgcctgtgttgttgtttttgtcgcactgctttgcttaatcttggccaggtcgcagttgtaaattagaacttgttctcaactggcttacctgatAAAATCaaggtgaaacaaaaataaataataaataaataaacgcaagctgcaatgaatgagtata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2594613 lncRNA upstream 10216 28281171 ~ 28285957 (+) True G2268103
TU2594598 lncRNA upstream 76225 28219643 ~ 28219948 (+) True G2268088
TU2594588 lncRNA upstream 81844 28213634 ~ 28214329 (+) True G2268078
TU2594569 lncRNA upstream 126108 28169738 ~ 28170065 (+) True G2268060
TU2594568 lncRNA upstream 126661 28169008 ~ 28169512 (+) True G2268059
TU2594644 lncRNA downstream 51330 28351197 ~ 28351400 (+) True G2268132
TU2594645 lncRNA downstream 51951 28351818 ~ 28352214 (+) False G2268133
TU2594646 lncRNA downstream 51951 28351818 ~ 28352373 (+) True G2268133
TU2594662 lncRNA downstream 89125 28388992 ~ 28389324 (+) True G2268147
TU2594669 lncRNA downstream 94531 28394398 ~ 28394676 (+) True G2268151
XM_036970187.1 mRNA upstream 12 28256446 ~ 28296161 (+) False LOC110504299
XM_036970188.1 mRNA upstream 12 28256446 ~ 28296161 (+) False LOC110504299
XM_036970189.1 mRNA upstream 1664 28256447 ~ 28294509 (+) False LOC110504299
XM_036970185.1 mRNA upstream 51610 28225437 ~ 28244563 (+) True LOC110504927
XM_021583803.2 mRNA upstream 86450 28198673 ~ 28209723 (+) False LOC110504926
NM_001165231.2 mRNA downstream 2537 28302404 ~ 28304890 (+) True m1ip1
trnav-uac-98 mRNA downstream 53750 28353617 ~ 28353689 (+) True trnav-uac-98
XM_021583808.2 mRNA downstream 58825 28358692 ~ 28370507 (+) False LOC110504931
XM_021583810.2 mRNA downstream 58825 28358692 ~ 28370507 (+) False LOC110504931
XM_036969776.1 mRNA downstream 58825 28358692 ~ 28370507 (+) False LOC110504931
TU2593017 other upstream 1360284 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 1675225 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 1923690 26361992 ~ 26372483 (+) True LOC110504416
TU2592623 other upstream 2004512 26289825 ~ 26291661 (+) False LOC118946064
TU2594875 other downstream 467010 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 596888 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 2877023 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 4563569 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 5116223 33416090 ~ 33421685 (+) True LOC110505056

Expression Profile