RNA id: TU2594737


Basic Information

Item Value
RNA id TU2594737
length 274
lncRNA type intronic
GC content 0.47
exon number 1
gene id G2268211
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 28498565 ~ 28498838 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatatatcaatgaattggcgcgggcactagaaaagtctgcagcacccggcctcaccctactagaatctgaagtcaaatgtctgctgtttgctgatgatctggtgcttctgtcaccaaccaaggagggcctacagcagcacctagatcttatgcacagattctgtcagacctgggccctgacagtaaatctcagtaagaccaaaataatggtgttccaaaaaaggtccagtcaccaggaccacaaatacaaattccatctagacacggttgccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2594678 lncRNA upstream 95875 28402405 ~ 28402690 (+) True G2268160
TU2594671 lncRNA upstream 102333 28395968 ~ 28396232 (+) True G2268153
TU2594670 lncRNA upstream 103604 28394755 ~ 28394961 (+) True G2268152
TU2594669 lncRNA upstream 103889 28394398 ~ 28394676 (+) True G2268151
TU2594662 lncRNA upstream 109241 28388992 ~ 28389324 (+) True G2268147
TU2594740 lncRNA downstream 6548 28505386 ~ 28505621 (+) True G2268214
TU2594743 lncRNA downstream 8527 28507365 ~ 28507578 (+) True G2268217
TU2594746 lncRNA downstream 11851 28510689 ~ 28511106 (+) True G2268220
TU2594751 lncRNA downstream 13564 28512402 ~ 28512607 (+) True G2268222
TU2594763 lncRNA downstream 44521 28543359 ~ 28543750 (+) True G2268234
XM_021583815.2 mRNA upstream 72906 28410311 ~ 28425659 (+) False LOC110504935
XM_021583816.2 mRNA upstream 72906 28410311 ~ 28425659 (+) False LOC110504935
XM_036970238.1 mRNA upstream 72906 28410311 ~ 28425659 (+) True LOC110504935
XM_021583814.2 mRNA upstream 88726 28407018 ~ 28409839 (+) True LOC110504934
XR_005041208.1 mRNA upstream 94366 28402249 ~ 28404199 (+) True LOC110504300
XM_036969699.1 mRNA downstream 73318 28572156 ~ 28661572 (+) False LOC110504439
XM_036969573.1 mRNA downstream 205565 28704403 ~ 28722745 (+) False LOC110504936
XM_036969575.1 mRNA downstream 205574 28704412 ~ 28722745 (+) False LOC110504936
XM_036969574.1 mRNA downstream 205575 28704413 ~ 28722745 (+) False LOC110504936
XM_036969576.1 mRNA downstream 205583 28704421 ~ 28722745 (+) True LOC110504936
TU2593017 other upstream 1562676 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 1877617 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 2126082 26361992 ~ 26372483 (+) True LOC110504416
TU2592623 other upstream 2206904 26289825 ~ 26291661 (+) False LOC118946064
TU2594875 other downstream 268039 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 397917 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 2678052 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 4364598 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 4917252 33416090 ~ 33421685 (+) True LOC110505056

Expression Profile