RNA id: TU2594743


Basic Information

Item Value
RNA id TU2594743
length 214
lncRNA type intronic
GC content 0.43
exon number 1
gene id G2268217
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 28507365 ~ 28507578 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacagggaattttttactaggattaaatgccaggaattgtgaaaaactgagtttaaatgtatttggctaaggtgtatgtaaacttctgacttcaactttagatacagagagagggagatagatgctgagggggagagatggagggagagagagggaaagagtcagatacagagagaaagaaacagagagcgagagagaggaacagagagcgagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2594740 lncRNA upstream 1744 28505386 ~ 28505621 (+) True G2268214
TU2594737 lncRNA upstream 8527 28498565 ~ 28498838 (+) True G2268211
TU2594678 lncRNA upstream 104675 28402405 ~ 28402690 (+) True G2268160
TU2594671 lncRNA upstream 111133 28395968 ~ 28396232 (+) True G2268153
TU2594670 lncRNA upstream 112404 28394755 ~ 28394961 (+) True G2268152
TU2594746 lncRNA downstream 3111 28510689 ~ 28511106 (+) True G2268220
TU2594751 lncRNA downstream 4824 28512402 ~ 28512607 (+) True G2268222
TU2594763 lncRNA downstream 35781 28543359 ~ 28543750 (+) True G2268234
TU2594768 lncRNA downstream 44791 28552369 ~ 28552568 (+) True G2268239
TU2594773 lncRNA downstream 51526 28559104 ~ 28559315 (+) True G2268244
XM_021583815.2 mRNA upstream 81706 28410311 ~ 28425659 (+) False LOC110504935
XM_021583816.2 mRNA upstream 81706 28410311 ~ 28425659 (+) False LOC110504935
XM_036970238.1 mRNA upstream 81706 28410311 ~ 28425659 (+) True LOC110504935
XM_021583814.2 mRNA upstream 97526 28407018 ~ 28409839 (+) True LOC110504934
XR_005041208.1 mRNA upstream 103166 28402249 ~ 28404199 (+) True LOC110504300
XM_036969699.1 mRNA downstream 64578 28572156 ~ 28661572 (+) False LOC110504439
XM_036969573.1 mRNA downstream 196825 28704403 ~ 28722745 (+) False LOC110504936
XM_036969575.1 mRNA downstream 196834 28704412 ~ 28722745 (+) False LOC110504936
XM_036969574.1 mRNA downstream 196835 28704413 ~ 28722745 (+) False LOC110504936
XM_036969576.1 mRNA downstream 196843 28704421 ~ 28722745 (+) True LOC110504936
TU2593017 other upstream 1571476 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 1886417 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 2134882 26361992 ~ 26372483 (+) True LOC110504416
TU2592623 other upstream 2215704 26289825 ~ 26291661 (+) False LOC118946064
TU2594875 other downstream 259299 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 389177 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 2669312 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 4355858 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 4908512 33416090 ~ 33421685 (+) True LOC110505056

Expression Profile