RNA id: TCONS_00005438


Basic Information

Item Value
RNA id TCONS_00005438
length 742
RNA type processed_transcript
GC content 0.42
exon number 2
gene id XLOC_002946
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36673387 ~ 36682522 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGCAACATCCGACAACAATAATCTAACAGGTGGACGCTATTCGTACTGAGTTTTTGTCTCTTGAATCATTTAAAGTGTAGGATTAAATAAACACGCGATGGGCAGAGACTATTACGCTATTTTGGAAATAAACCGCAACGCCATTGATGCAGACATAAAGAAGGCGTACCGGCGGCTCGCACTGAAGCATCACCCGCGCAGCAACAGCCACGCGCGCGCCGCCGAGCGCTTCAATCTGCTGGCGGAGGCGTTTGACGTGCTGAGCGACCGTATGTTCACAAGACAGTGACAGGCCACAATTTACATtcacaaaacacacatgcaaCCCACAACTGCTGTAGAATATGCTTACTAAAACGTTTTATTACAACGGAACGGATTTATCTATGTATCTTTGTAAACATTATGTCGGTCCCAGAAAGTTCTGAGCCCAAAACGCTGTGTATACAATATGGTTTGCGACTAAATCTGCTTCTAAAAAGAGCGTGCATATGAATGCTTTCCAGTAGGACCAAAATACATGAATATTTGGAGTACATAGTGGGACAGAATTTGTAACATATAGagctaaatattattaaaatttatttatacctTGCATATACATTTATCCGCCACTTTTTTACACCTTCCAACTAGGTTGGGCCCCCTTGGTCACAAAGCACAATTATAACATCATTTCTGTCATCACCCTCATGTCTGTTCAATCCTTTGAGACCTTTGTTTATCTTCTggacacaa

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0051085 chaperone cofactor-dependent protein refolding biological_process
GO:0005829 cytosol cellular_component
GO:0051082 unfolded protein binding molecular_function
GO:0051087 chaperone binding molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-040910-4 Predicted to enable chaperone binding activity and unfolded protein binding activity. Predicted to be involved in chaperone cofactor-dependent protein refolding. Predicted to act upstream of or within protein folding. Predicted to be active in cytosol. Is expressed in Kupffer's vesicle; nervous system; and pronephric duct. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 34. Orthologous to human DNAJB13 (DnaJ heat shock protein family (Hsp40) member B13).

Ensembl:

ensembl_id ENSDART00000139097

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006100 lncRNA downstream 19041 36654197 ~ 36662611 (-) True XLOC_002945
TCONS_00005434 lncRNA downstream 19052 36654197 ~ 36662600 (-) False XLOC_002945
TCONS_00006099 lncRNA downstream 30748 36642166 ~ 36650904 (-) True XLOC_002944
TCONS_00006098 lncRNA downstream 70751 36595380 ~ 36610901 (-) True XLOC_002942
TCONS_00006097 lncRNA downstream 211757 36465343 ~ 36469895 (-) True XLOC_002939
TCONS_00005446 lncRNA upstream 121302 36803816 ~ 36807660 (-) True XLOC_002951
TCONS_00005450 lncRNA upstream 136863 36819377 ~ 36820823 (-) True XLOC_002952
TCONS_00005454 lncRNA upstream 358564 37041078 ~ 37042232 (-) True XLOC_002955
TCONS_00005774 lncRNA upstream 735720 37418234 ~ 37476245 (-) True XLOC_002958
TCONS_00006101 lncRNA upstream 802898 37485412 ~ 37487685 (-) False XLOC_002959
TCONS_00005433 mRNA downstream 47726 36627741 ~ 36633926 (-) True XLOC_002943
TCONS_00005431 mRNA downstream 47770 36613035 ~ 36633882 (-) False XLOC_002943
TCONS_00005430 mRNA downstream 55900 36613004 ~ 36625752 (-) False XLOC_002943
TCONS_00005432 mRNA downstream 62978 36615958 ~ 36618674 (-) False XLOC_002943
TCONS_00005429 mRNA downstream 89166 36558815 ~ 36592486 (-) True XLOC_002941
TCONS_00005439 mRNA upstream 1486 36684000 ~ 36691681 (-) True XLOC_002947
TCONS_00005440 mRNA upstream 37652 36720166 ~ 36721726 (-) False XLOC_002948
TCONS_00005441 mRNA upstream 37721 36720235 ~ 36726188 (-) True XLOC_002948
TCONS_00005442 mRNA upstream 48525 36731039 ~ 36738619 (-) False XLOC_002949
TCONS_00005443 mRNA upstream 50159 36732673 ~ 36738642 (-) True XLOC_002949
TCONS_00005427 other downstream 179321 36487618 ~ 36502331 (-) True XLOC_002940
TCONS_00005410 other downstream 518358 36163179 ~ 36163294 (-) True XLOC_002926
TCONS_00005408 other downstream 1027298 35654245 ~ 35654354 (-) True XLOC_002923
TCONS_00005406 other downstream 1061203 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005403 other downstream 1294410 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005456 other upstream 669966 37352480 ~ 37357303 (-) True XLOC_002957
TCONS_00005460 other upstream 1369138 38051652 ~ 38051766 (-) False XLOC_002962
TCONS_00005461 other upstream 1389563 38072077 ~ 38072168 (-) True XLOC_002963
TCONS_00005463 other upstream 1391798 38074312 ~ 38074391 (-) True XLOC_002962
TCONS_00005467 other upstream 1608373 38290887 ~ 38316070 (-) False XLOC_002965

Expression Profile

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