RNA id: TU2596590


Basic Information

Item Value
RNA id TU2596590
length 761
lncRNA type intronic
GC content 0.40
exon number 1
gene id G2269919
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 29917813 ~ 29918573 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACCCCGCCCCAAGTGAACACAGATGTTGGGTGGAAATTATGAAACGCTCCGTTTTCTACTCCAATATAAAAAAACGCGACAAATTGTACATTAGACCAGAGAGCATGGAGCTGTAGCGTCGTTGAAATGGTTGGCAATTTAAATACAGACCAGAGGACATAGGGACGCTGGTGTTACAAATGGTTAAGAAGAAAAGTTCTACAAAACTGAAGACTACGcattcagtctgcagctgtttGAGTACATTAGTCTGGTAAACGCGACCGATCGAACGACCAAATGGTACTCTGAAAGGTCCATTCTGGAGAACATTTCACTATCGAATGACAATTGGTATCCCTGACGTATCCATTATAACAAGCTACAACTACGAAAGACTTTGATCTCTAGTGGACAAACCAGAAACTTTCTGTCGACTGATTCTCCAGCAGAGGGACCGGtgatcacagagagagacaaaaaagaCCTACAGTTGTAAATATATAAAATGCCATTTATTTTTGAATGAGAGGCTGTTCATGTGCAAAGTGTTAGCATTTCCATGAGCCTAGTTATCAGATGTGTGTACGATAGTGAAGTCCTTTGTCTTTCCCACTCTAtctgtccccacccctttccattgtctaccaagccgtcatatcgggctTAGTCCACTAGGAACTTTTCATTTTATTATGTAGTAACCAATGTATAacctattctgtgtgtgtgtttatgcaattatgtgtgattatttagttagtaaataaataattaagc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2596578 lncRNA upstream 87226 29830285 ~ 29830587 (+) True G2269910
TU2596569 lncRNA upstream 104393 29813183 ~ 29813420 (+) True G2269901
TU2596554 lncRNA upstream 129014 29788597 ~ 29788799 (+) True G2269886
TU2596548 lncRNA upstream 134257 29783338 ~ 29783556 (+) True G2269880
TU2596547 lncRNA upstream 134991 29782467 ~ 29782822 (+) True G2269879
TU2596631 lncRNA downstream 39634 29958207 ~ 29958876 (+) True G2269958
TU2596677 lncRNA downstream 142641 30061214 ~ 30062012 (+) False G2270001
TU2596678 lncRNA downstream 142641 30061214 ~ 30062077 (+) True G2270001
TU2596688 lncRNA downstream 169376 30087949 ~ 30088478 (+) True G2270010
TU2596959 lncRNA downstream 189957 30108530 ~ 30108758 (+) True G2270258
XM_036969800.1 mRNA upstream 30302 29872871 ~ 29887511 (+) False LOC110504963
XM_036969799.1 mRNA upstream 30302 29872878 ~ 29887511 (+) False LOC110504963
XM_021583877.2 mRNA upstream 30302 29872879 ~ 29887511 (+) False LOC110504963
XM_021583879.2 mRNA upstream 30302 29872879 ~ 29887511 (+) True LOC110504963
XM_036970261.1 mRNA upstream 69965 29838862 ~ 29847848 (+) False LOC110504959
XM_036969793.1 mRNA downstream 17283 29935856 ~ 30069203 (+) False LOC110504964
XM_036969794.1 mRNA downstream 17283 29935856 ~ 30069203 (+) False LOC110504964
XM_036969789.1 mRNA downstream 17293 29935866 ~ 30069203 (+) False LOC110504964
XM_036969792.1 mRNA downstream 17293 29935866 ~ 30069203 (+) False LOC110504964
XM_036969795.1 mRNA downstream 126356 30044929 ~ 30069203 (+) False LOC110504964
TU2594947 other upstream 1019734 28896755 ~ 28898079 (+) True G2268400
TU2594875 other upstream 1150084 28766877 ~ 28767729 (+) True G2268340
TU2593017 other upstream 2981924 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 3296865 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 3545330 26361992 ~ 26372483 (+) True LOC110504416
TU2597789 other downstream 1258317 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 2944863 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 3497517 33416090 ~ 33421685 (+) True LOC110505056
TU2601118 other downstream 4283510 34202083 ~ 34207415 (+) True LOC110505080
TU2601139 other downstream 4313422 34231995 ~ 34232604 (+) True G2274048

Expression Profile