RNA id: TU2597093


Basic Information

Item Value
RNA id TU2597093
length 212
lncRNA type inter_gene
GC content 0.25
exon number 1
gene id G2270388
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 30231773 ~ 30231984 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAGACAGACATACTAATAATTAAAACTATATATTAATAGCCTTATGTTTTTATTGATCTACACAATATTAAATACTTGCATTATGTTTTATCATTGAAAAACAGTTCAATATAATCAAACTTATATAAATAACTAGAACTTTTGTCATTTTAAAGTGTTCTTCATGGTTGAAAAGACAAAGGGCGCAATAGCCCGATATGTACTCTTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2597087 lncRNA upstream 15569 30215906 ~ 30216204 (+) True G2270382
TU2597079 lncRNA upstream 19426 30212137 ~ 30212347 (+) True G2270374
TU2597069 lncRNA upstream 23147 30208386 ~ 30208626 (+) True G2270364
TU2597009 lncRNA upstream 28880 30201336 ~ 30202893 (+) True G2270307
TU2596959 lncRNA upstream 123015 30108530 ~ 30108758 (+) True G2270258
TU2597116 lncRNA downstream 31561 30263545 ~ 30263896 (+) True G2270407
TU2597130 lncRNA downstream 89980 30321964 ~ 30383010 (+) True LOC110504976
TU2597189 lncRNA downstream 150629 30382613 ~ 30427407 (+) True G2270478
TU2597275 lncRNA downstream 292684 30524668 ~ 30524958 (+) True G2270553
TU2597279 lncRNA downstream 300917 30532901 ~ 30533121 (+) True G2270557
XM_021583882.2 mRNA upstream 1585 30224958 ~ 30230188 (+) True LOC110504968
XM_021583883.2 mRNA upstream 3618 30224956 ~ 30228155 (+) False LOC110504968
XM_036970193.1 mRNA upstream 3618 30224956 ~ 30228155 (+) False LOC110504968
NM_001124632.1 mRNA upstream 8355 30219930 ~ 30223418 (+) True cdx1
XM_021583881.2 mRNA upstream 26085 30115525 ~ 30205688 (+) True LOC100136647
XM_021583887.2 mRNA downstream 40293 30272277 ~ 30282447 (+) False LOC110504970
XM_036969605.1 mRNA downstream 40293 30272277 ~ 30282447 (+) True LOC110504970
XM_021583888.2 mRNA downstream 51715 30283699 ~ 30286467 (+) True LOC110504971
XM_021583889.2 mRNA downstream 70604 30302588 ~ 30319039 (+) False LOC110504973
XM_036969771.1 mRNA downstream 71913 30303897 ~ 30319039 (+) True LOC110504973
TU2594947 other upstream 1333694 28896755 ~ 28898079 (+) True G2268400
TU2594875 other upstream 1464044 28766877 ~ 28767729 (+) True G2268340
TU2593017 other upstream 3295884 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 3610825 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 3859290 26361992 ~ 26372483 (+) True LOC110504416
TU2597789 other downstream 944906 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 2631452 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 3184106 33416090 ~ 33421685 (+) True LOC110505056
TU2601118 other downstream 3970099 34202083 ~ 34207415 (+) True LOC110505080
TU2601139 other downstream 4000011 34231995 ~ 34232604 (+) True G2274048

Expression Profile