RNA id: XR_005041330.1


Basic Information

Item Value
RNA id XR_005041330.1
length 2821
RNA type mRNA
GC content 0.50
exon number 15
gene id pabpc1b
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 45493 ~ 60677 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATATTTCCCTCCTCTAAACCCCAGTTGATAGTGCTGTGTGAACGCCAGCGCTTCCTCGCCACTTATTcctagaaaaaatatatatataaaaaatatatatattttttaaaccttaacatatatattttttaaccaacTCGTTGAAGCAGGAGTTGATATTCGAACTGAAGTGGAACGACGAGAATGTTACGCTGCGTTTCTCTGGTTACTGTTACCATCTGCAACGGGAAAAGCAAGCAAGGACATGTTGATTTCAAGCTCTATTTTGTCAATTATATAGACATTTTAAACAACATATACGTAACGTACTGGTCGTATTTTAAACGTTTCAAATATTTATCTTCTAAATTGAAACTTCATTAGAACTTGTCAAGCTTGTTAAACTTTGCTAGCCAGCTGGTTTAGATTCAACCCTCGAGTTAGCGTAACCAGACCCTTTTTAAATTACGAACAATTTCGTCTGAAAGGTAACATTTTTTTTGTCGGATTTCGTTACGAAAATGAACCCCGGTGCTCCTACTTACCCCATGGCATCCCTGTATGTCGGTGATCTTCATCAAGATGTGACCGAAGCTCTGCTATACGAAAAATTCAGCCCCGCCGGGGCCATCCTTTCCATCCGGGTCTGCAGGGATATGATCACCCGTCGTTCCCTCGGGTACGCCTATGTCAACTTCCAACAGCCAGCTGATGCTGAGAGGGCTCTAGACACCATGAACTTTGACGTGATCAAGGGTCGTCCTGTCCGCATCATGTGGTCTCAGCGTGACCCATCCctgaggaagagcggggtgggcAACATCTTCATCAAGAACCTAGACAAATCTATTGACAACAAGGCCCTCTACGACACCTTTTCTGCCTTCGGCAACATCCTGTCCTGCAAGGTGGTTTGTGATGAGAATGGCTCAAAGGGGTATGGCTTTGTGCATTTTGAGACCCAGGAGGCGGCTGAAAGAGCCATTGAGAAAATGAACGGCATGCTGCTCAATGACAGGAAAGTGTTTGTGGGACGATTCAAATCTCGCAAAGAACGTGAGGCTGAGCTTGGTGCCCGGGCCAAAGAGTTCACCAACGTTTACATCAAGAACTTTGGTGAAGATATGGATGATGAGAAACTGAGGGAGATCTTCAGCAAGTATGCCGAGTATGGCAGTGCCATGAGTATCCGTGTCATGACTGATGACAGTGGCAAATCCAGAGGCTTTGGCTTTGTGAGCTTCGAGAGGCACGAGGACGCCCAAAAGGCTGTTGATGAGATGAATGGGAAGGAGCTGAATGGAAAGCTCATCTACGTGGGCCGCGCCCAGAAGAAGGTGGAGCGTCAGACGGAGCTGAAACGCAAGTTTGAACAGATGAAACAGGATCGCATGACGCGCTACCAGGGTGTCAATCTCTACGTGAAGAATCTTGACGATGGAATTGATGACGAGCGCTTGCGTAAAGAATTCTCCCCATTCGGCACCATCACCAGTGCCAAGGTGATGATGGAGGGTGGTCGCAGCAAGGGCTTCGGCTTTGTGTGCTTCTCCTCCCCGGAGGAGGCCACCAAGGCCGTGACGGAGATGAACGGGCGCATCGTGGCCACCAAGCCGCTGTACGTGGCGCTGGCTCAGAGGAAAGAGGAGCGTCAGGCTCACCTCACCAACCAGTACATGCAGAGGATGGCCACCGTCCGGCCCGTACCCAACCCAGTCCTCAACCCCTACCAGCCTGCCCCTCCTTCTGGGTACTTCATGGCTGCCATCCCACAGGCTCATAACAGAGCTGCTTACTACCCTGCCAACCAGATAGCCCAGCTGAGACCCAGCCCTCGCTGGGCCACCCAGGGTGTGAGACCTCAACACTTCCAGAACATGCCAGGCTCCATACGTCCTTCCACACCCAGACAGCCCAGCTTCAGCCCTATGAGGCCAACCAACCAGGTGCCTCGCATGATGTCCACGCGAAGCGTGGGCCCCCAGACCATGGGGCCCCGCGCCCCTTCGGCCCCAGTGGGTGGAGCCCCGGTGCGTGGCGTGCCTCAGTATAAGTACGCCACCGGAGTCCGCAACCCACAGAACCACGTTAACTCACAGCCCCAAGTCACTATGCAGCAGCCTGCTGTCCATGTGCAGGGCCAGGACCCTCTGACTGCCTCCATGCTGGCCGCTGCACCACCTCAGGAACAGAAGCAGATGTTGGGTGAGCGCTTGTTCCCGTGCATCCAGAACATGCACCCCAGCCTGGCTGGGAAGATCACTGGCATGCTGCTAGAGATAGACAACTCTGAACTGCTTCACATGCTGGAGTCTCCCGAGTCTCTCCGCTCTAAGGTGGATGAGGCTGTGGCTGTGCTGCAGGCCCACCAGGCCAAGGAATTAGTCCAGAAGACTGTCCCCAACTCTGCTGGTGGTCCGAGTGTCTGAGCCCAGGTAGGCCGAGTGTCTGAGCCCAGGTAGGCCGGGTGTCTGAGCCCAGGGATGGGGAACCTTGGAACTTCATCTTTTAAAAAATGATAATTCTGATGAAACTTTGGAAAAAGTTAACACCAAAACAATGCAAAAAGAGAACCTGTTCTAAAAAGGCAAGTCTTCTTTCAGCCAGGCCTAGAGAAGAGCACACTGGCTTTAGAAAAAGtttcaaaataaacatttaaagtGTTTTAGAAGAGAATTCCATATGATGGAATGAGGGCTTCCAGAAAGTGTTCCCTTCTGGTGTTTTATTCCTTTTAGATGTATCAATGTTTGGGGTGTACGTGGCCAGGATGTTGAATAACCAGCGTTGTGAAATGTACCTTTACCTTTGTTTGCTTGAATTAAACTTCTTAAAGGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2615256 lncRNA upstream 2158 43117 ~ 43336 (+) True G2287167
TU2615249 lncRNA upstream 10646 23604 ~ 34848 (+) False G2287160
TU2615273 lncRNA downstream 16882 77559 ~ 77991 (+) True G2287182
TU2615279 lncRNA downstream 19355 80032 ~ 102732 (+) False rnf19a
TU2615297 lncRNA downstream 38976 99653 ~ 168304 (+) True G2287201
TU2615277 lncRNA downstream 70964 131641 ~ 134719 (+) False rnf19a
TU2615278 lncRNA downstream 70964 131641 ~ 134719 (+) True rnf19a
XM_036971765.1 mRNA downstream 19251 79928 ~ 133393 (+) False rnf19a
XR_005041408.1 mRNA downstream 19251 79928 ~ 133393 (+) False rnf19a
XR_005041409.1 mRNA downstream 19251 79928 ~ 133393 (+) False rnf19a
XR_005041410.1 mRNA downstream 19251 79928 ~ 133393 (+) False rnf19a
XR_005041411.1 mRNA downstream 19251 79928 ~ 133393 (+) False rnf19a
TU2615343 other downstream 173065 233742 ~ 240640 (+) True rpl30
TU2615646 other downstream 426116 486793 ~ 487391 (+) False G2287470
TU2615647 other downstream 426116 486793 ~ 487482 (+) False G2287470
TU2615648 other downstream 426116 486793 ~ 487551 (+) False G2287470
TU2615649 other downstream 426116 486793 ~ 487661 (+) True G2287470

Expression Profile