RNA id: TU2615278


Basic Information

Item Value
RNA id TU2615278
length 3034
lncRNA type sense_over
GC content 0.45
exon number 2
gene id rnf19a
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 79928 ~ 134719 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGGATTGTCAAGCTTCAGTTATAATATGAACCGGTCAAAGAAAAGATCAAACTGACCTCAGAGGGACCAGTCAATAAGTCATTTTTATTTTTTCCATgattctataaaaaaaaaatgaatattacTTTTAAGATGTTGATGAATATTGTTCTGTAGTTTTAGTATTTTCCATGTTGAGCCCTGTGGGGTCAGATCCTGTGTTAGGGGAGGCCAGGGGGGGTTGGGGTGAGCAGAGGGAAGGAAGAGTCAACTAATTTAACCCTTTGTCTTCTTAAACAACACAGATTTTAACTGTCAGGATTGGATTTAGAATATAAGTAAATATTCCAGAAAGAATCAGGCCTCAGAGTTGAGCTGGCCCATCATCAGTAGGAGGACAACCGCGGTTGTTTGGTATAAAGGGAGCGATAAGAGGTTGACTCTCTTTTCATTCTGTTATAGATCTACATCACTTCTAATTAAAAGGCTATGGTGATTTAAGCCTGAGTTCATGATCTGTGCTGTCTTCAACTCGTAGGCCATTATCACCAGTTGGAGGGGACAAGCCAGGCTAACGGTGATGCATtcaggtcgtttcaaacacctcTCCATTGGAACCATGCAAATGAGGATTTTTCTACCTATGTTGCCTTTTTGAAAAAGCTGCTTCTGTCTGTTTgcacctcatcctgtctcttcaaTAGATACAGGACTGTGTCccattccctgtgtagtgcactactatgggccctggtcactatatagagaatagggtgccatctgggacgcAACCAAAGAAATGTAGAGAAAAGCAGAATGTCTAAGTGTTGTTATCGCTACAGATTCTATCTAACCATCCCGTCATTGTGTTTAGCAAGTCAAGAGATGCTAACCATCCCGTTATTGTGTTTAGCAAGTCAAGAGATGCTAACCATCCCGTCATTGTGTTTAGCAAGTCAAGATGCTAACCATCCCGTCATTGTGTTTAGCAAGTCAAGATGCTAATCATCCCGTCATTGTGTTTAACAAGTCGAGAGATGCTAACCATCCCATCATCATTGTGTTTAGCAAGTCAAGATGCTAACCATCCCGTCATCATTGTGTTTAGCAAGTCAAGAGATGCTAACCATCCCGTTATTGTGTTTAGCAAGTCAAGAGATGCTAACCATCCCGTCATTGTGTTTAGCAAGTCAAGAGATGCTAACCATCCCGTCATTGTGTTTAGCAAGTCAAGATGCTAACCATCCCGTCATTGTGTTTAGCAAGTCAAGATGCTAATCATCCCGACATTGTGTTTAACAAGTCGAGAGATGCTAACCATCCCATCATCATTGTGTTTAGCAAGTCAAGATGCTAACCATCCCGTCATTGTGTTTAGCAAGTCAAGATGCTAACCATCCCATCATCATTGTGTTTAACAAGTCCAGAGATGCTAATGGACACACCAATCTGGTAACCACCTAGCCTACCAAAGACAGAACAGGCTACTGTGGTTGAACCCTCACTCCTGAGGACCCCTGATGAGGGGTGTAGTGTTGCTCTGCAGAGCAGCCCGAGTCGGTGTccaatggagccctattccctatatagtgtagcaTTTAAGACCAACCTTCTGCCAAGCGGTCCATGATCTGATTTAATGAGTAACATTCACCTATAGCTTAGTGTTTATTTGAAGGATTTGGGGGGGAAACGCTTCAGCTGTACAGTTCCCTTCCACTTCTTCACTGTAACAAAGGTCTTGTCTTGGGTACAGTCAACACTGTGACAACAGTCTTGGGTACAGTCAACACTGTGACAACAGTCTTGGGTACAGTCAACACTGTGACAACAGTCTTGGGTACAGTCAACACTGTGACAACAGTCTTGGGTACAGTCAACACTGTGACAACAGTCTTGGGTACAGTCAACACTGTGACAACAGTCTTGGGTACAGTCAACACTGTGACAACAGTCTTGGGTACAGTCAACACTGTGACAACAGTCTTGGGTACAGTCAACACTGTGACAACAGTCTTGGGTACAGTCAAGTGTTTCAACGTCAAAGGCTATGGTTTCATCAAGAATGAGACGTCTtcggggggggggtattttttgCCGTGTTAGTACATGTTCAAACGAAAGGATTCATCTTTGAACACGGAAAGCGTTAGGGTTGAGGCTACGTTCACGTACCTGTGATTCTCAGAGTGCATGGATGTGTGCTCTAAACCAGggatattcaactcttaccctacgaggtctgtAGCCTGCTGGTTTCCTGTTCtatctgataattaattgcacccatctggtgtcccaggtctaaatcagtccctgatttagaggggaaccacccacctggtgtcccaggtctaaatcaggccctgactagaggggaatcacccacctggcgtcccaggtctaaaccagttcCTGATTGTCAGTCCAGAGTTAAATTCTCTAAACTAAAGGTtgaccctaaactgttcatttatCTACTGTTGTGGTGCTGTGCAACTATCAGTCTGGATTGATAATATGATTCTGTATGATACTTTGAAGACTAGTGCCAGGCCTCATGTAGAGAGGAGTTTATGCTATTTctagtgctagaggcatcacttcagaccctggttcagcggtctaagacactgcatctcagtgctggaggcgtcactacagaccctggttcagcggtcactgcatctcagtgctagaggcgtcactacagaccctggttcagcggtcactgcatctcagtgctagaggcgtcactacagaccctggttcagcggtctaaggcactgcatctcagtgctagaggcgtcactacagaccctggttcagaggtctaagacactgcatctcagtgctagaggcgtcactacagaccctggttcaattccaggctgtatcacaaccgcccgtgattgggagtcccatagggtggtgcagaattggcccagcgttgtccaggttagggtttggccagggtgggctgtcattgtaaataagaatttgttcataactgacttgcctaattaaataaaaaactgTACACTTATGTTACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2615279 lncRNA upstream 28909 80032 ~ 102732 (+) False rnf19a
TU2615273 lncRNA upstream 53650 77559 ~ 77991 (+) True G2287182
TU2615264 lncRNA upstream 80347 50283 ~ 51294 (+) True pabpc1b
TU2615256 lncRNA upstream 88305 43117 ~ 43336 (+) True G2287167
TU2615248 lncRNA upstream 96793 24788 ~ 34848 (+) True G2287160
TU2615328 lncRNA downstream 28498 163217 ~ 163694 (+) True G2287226
TU2615332 lncRNA downstream 43230 177949 ~ 180253 (+) False G2287230
TU2615333 lncRNA downstream 43230 177949 ~ 179086 (+) True G2287230
TU2615337 lncRNA downstream 68088 202807 ~ 203603 (+) True G2287233
TU2615356 lncRNA downstream 80744 215463 ~ 216460 (+) True G2287248
XM_036971329.1 mRNA upstream 70964 45494 ~ 60677 (+) False pabpc1b
XM_036970870.1 mRNA downstream 20257 154976 ~ 174427 (+) False stk3
XR_005041286.1 mRNA downstream 20257 154976 ~ 174427 (+) False stk3
XR_005041287.1 mRNA downstream 20257 154976 ~ 174427 (+) False stk3
XR_005041288.1 mRNA downstream 20257 154976 ~ 174427 (+) False stk3
XR_005041289.1 mRNA downstream 20257 154976 ~ 174427 (+) True stk3
TU2615343 other downstream 99023 233742 ~ 240640 (+) True rpl30
TU2615646 other downstream 352074 486793 ~ 487391 (+) False G2287470
TU2615647 other downstream 352074 486793 ~ 487482 (+) False G2287470
TU2615648 other downstream 352074 486793 ~ 487551 (+) False G2287470
TU2615649 other downstream 352074 486793 ~ 487661 (+) True G2287470

Expression Profile