RNA id: XM_021559733.2


Basic Information

Item Value
RNA id XM_021559733.2
length 528
RNA type mRNA
GC content 0.52
exon number 5
gene id rpl30
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 233676 ~ 240640 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCAATCCGCTGAGATCAGCGAATCAGCGCAGGACCACGCCAACCTGCCGCAAAGCACGCTGGGACTTCCTTTCTTTCCGAGGCCATATTGGAGCAACATACTTGTTGGCCATAACGGAGTAAATCGCAGCTATGGTGGCCGCCAAGAAGACGAAAAAGTCCCTGGAGTCCATCAACTCCCGTCTCCAGCTGGTGATGAAGAGCGGTAAATATGTTCTGGGATACAAGCAGTCCCAGAAGATGATCCGCCAGGGAAAAGCAAAGCTGGTCATCCTGGCCAACAACACACCTGCCCTCAGGAAGTCTGAAGTGGAGTACTATGCCATGTTGGCCAAGACTGGCGTCCATCActacagtgggaacaacatcgaGCTGGGCACGGCCTGTGGAAAGTACTTCAGGGTGTGCACACTGGCTATCATCGACCCCGGTGATTCTGACATCATCAGGAGTATGCCAGACCAGCCGCAGGGGGAGAAGTAGACATTTCACACTCAATGttaaaaaataaactgttttCTATGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2615356 lncRNA upstream 17216 215463 ~ 216460 (+) True G2287248
TU2615337 lncRNA upstream 30073 202807 ~ 203603 (+) True G2287233
TU2615332 lncRNA upstream 53423 177949 ~ 180253 (+) False G2287230
TU2615333 lncRNA upstream 54590 177949 ~ 179086 (+) True G2287230
TU2615297 lncRNA upstream 65372 99653 ~ 168304 (+) True G2287201
TU2615380 lncRNA downstream 15473 255041 ~ 302892 (+) True G2287264
TU2615381 lncRNA downstream 16989 256557 ~ 259143 (+) True G2287265
TU2615385 lncRNA downstream 24667 264235 ~ 264879 (+) True G2287268
TU2615386 lncRNA downstream 25998 265566 ~ 283496 (+) True G2287269
TU2615353 lncRNA downstream 33813 273381 ~ 290978 (+) True G2287245
XM_036970855.1 mRNA upstream 28159 175807 ~ 205517 (+) True LOC110489350
XM_036970870.1 mRNA upstream 59249 154976 ~ 174427 (+) False stk3
XM_036971641.1 mRNA downstream 77335 316903 ~ 349528 (+) False spire1a
XM_036971638.1 mRNA downstream 77462 317030 ~ 349528 (+) False spire1a
XM_036971640.1 mRNA downstream 77462 317030 ~ 349528 (+) False spire1a
XM_036971639.1 mRNA downstream 77464 317032 ~ 349528 (+) True spire1a
XM_021559712.2 mRNA downstream 236664 476232 ~ 480567 (+) False psmg2
TU2615646 other downstream 247225 486793 ~ 487391 (+) False G2287470
TU2615647 other downstream 247225 486793 ~ 487482 (+) False G2287470
TU2615648 other downstream 247225 486793 ~ 487551 (+) False G2287470
TU2615649 other downstream 247225 486793 ~ 487661 (+) True G2287470
TU2616270 other downstream 1033806 1273374 ~ 1274170 (+) True G2287973

Expression Profile