RNA id: XM_036971638.1


Basic Information

Item Value
RNA id XM_036971638.1
length 1997
RNA type mRNA
GC content 0.52
exon number 11
gene id spire1a
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 316903 ~ 349528 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTctccacttatatcagtacatttgTAACAAGCTAAACATTACGAAACGTATATTCGGTAAAATAAGCCTAATGTAATTCGATACACTATAATAGCACTCCATACAAAAAAAAGGCTTATCTCACGCGGACAGATTTTGGGCAGAGTAAATCCTCtcgcttctcctcttcctctctgctggtGGCCACAATAAATTGCTGTAGGTGGACTCAGTGGCCGAGACAGTTGAGGAATACGGACATCACAACGCGGTTCGACGTTTATTTAGTTCTGTAGCAATACCTGTTTCGTACGCcgaaatacatatttttttctgtCGAAGACTGCCATTATTTACGTGGCTATAATAATGGTGTGAAGGTGGATAAACGGCCGGGGACCCAGGCTTCTCCAAGATTTCGGCGTTAATCAGTATCTGAACGCCGGTGCCGTGAACATGGATATCGCCGATGGAGCAGAGGAGCTTTCCTTGGAGGAAATCTTATCGTTGTACAGCCAGCCGATCAATGAAGAGCAGGGATGGGCTGTTTGTTACCAATGTTGCAGAACTTTGGTTCAGAAACACCGGAGGGTTCATTCCAAGACCTCCAGCGCTTCAGTTGGGGATTTGCCGAGAAGGATTGAAGGACCTGGCGATGTACGGATTCTGAGAGATGGAACAGTTCAATTGCACCACCAAGACAGCACAGaTAAACCCAGACCTCCCAACACTTCCTTAGAGGTGATTGAATCTCTGGGAATCATGATCTACAAGGCGTTGGACTACAGTCTGAAGGACAGCGAGGAGAGAGAGCTCAGTCCGCCTCTGGAGCAACTCATCGACATGATGACCAACatggcagagaaggagagggacagtgaCCCCTGCCATGATGAAGGTTACGAGGCCaccgaggaggaggaagacccaAACACTGTCTGTAATATTAAAAGATTCAGAGACGTGCTCACGcTGTGTACGTCCCACCTGCCCAGCCCCTCTGATGCCCCTAACCACTACCAGGCTGTGTGTCGGGCGCTCTACGCCGAGACCAGAGAGCTAAGCACCTTCCTGGAGAAGATCAGGAGTGCCAAAGAGAACCTGCGGCGGATGGCGCGAGTCACTGGAGAGGAACCCATCAGAGATGTCAACGAGCTACAGAACGCTGACTGGGCTAAGTTCTGGATGCAGGTGATGGGTGACCTGCGTAACGGGGTCAAGCTGAGGAAGGTCCAGGAGAGACAGTACAGCCCTCTACCTGTAGAGTTCCAGCTCACACCTTACGAGATGCTGATGGATGACATCCGCTTCAAACGATACAAACTACGGAACGTCATGTTACTCCAGGTGAATGGAGACATCCCTCCCAAGTTAAAGAGCGCTCATGAGGTCATCCTGGACTTCATCCGCTCCCGACCACCTCTCAACCCTGTTACTGGAAGGAAGTTGAAGCCTCACCCTGCGTGGCCGCAGACCCTACATGAGCGTCTCTTAGAGGGCATCAAACAGGAGAGGAAGCTACGGCCTGTTTCACCTGACGTGACCCGACGCAACCGCCTGGACTTGTTCACTCCAGATGCCCCCAGGAAGCACGCCACCAGCACCCTGTCCTGTCCACCAGCTCCCGGGGTGGGAGGGGCTCTGCGTCAGAGGAAGAGGCTCCTGAAGGCGCCCACGCTGTCTGAACTGGAGAGCTCAGAGTCCGATGATGAGCCCAGTCACAGCTCCTCCAGTTTGTCAGCATCCATGTTGGACGCCTCGTCTCCGGGATCTGTCCTGGGGAAGAACGcacCCCCTAGGTTCCGGCCCATCACCATGACTCCCCAGCCTGACAGTCACCCCTCCCCTCAGAGGAGACACTCCATTGAGAAGGAGCCCCCCACCAGCATACGACCCTTCACAGCCCCCACCAGACAGAGCTCCAATTCTCTGGTATGTACACTATTGTGTGCTGCATGGTATTATAGTGGACACTACTTAACTACTGTGTGCTGCATGGTATTATAGTGGACACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2615399 lncRNA upstream 2396 314435 ~ 314634 (+) True G2287282
TU2615349 lncRNA upstream 5478 310652 ~ 311552 (+) True G2287241
TU2615350 lncRNA upstream 6737 309918 ~ 310293 (+) True G2287242
TU2615397 lncRNA upstream 13029 303539 ~ 304001 (+) True G2287280
TU2615353 lncRNA upstream 26052 273381 ~ 290978 (+) True G2287245
TU2615601 lncRNA downstream 45533 395061 ~ 402253 (+) True G2287437
TU2615603 lncRNA downstream 47659 397187 ~ 401790 (+) True G2287439
TU2615610 lncRNA downstream 52815 402343 ~ 403679 (+) True G2287445
TU2615613 lncRNA downstream 87220 436748 ~ 437227 (+) True G2287448
TU2615615 lncRNA downstream 89578 439106 ~ 463255 (+) True G2287449
XM_021559733.2 mRNA upstream 77462 233676 ~ 239568 (+) False rpl30
XM_036970855.1 mRNA upstream 111513 175807 ~ 205517 (+) True LOC110489350
XR_005041287.1 mRNA upstream 142603 154976 ~ 174427 (+) False stk3
XM_021559712.2 mRNA downstream 126704 476232 ~ 480567 (+) False psmg2
XM_036971455.1 mRNA downstream 126704 476232 ~ 480778 (+) False psmg2
XM_036971456.1 mRNA downstream 126704 476232 ~ 480835 (+) False psmg2
XR_005041349.1 mRNA downstream 126705 476233 ~ 482157 (+) False psmg2
XM_036971454.1 mRNA downstream 126714 476242 ~ 482157 (+) True psmg2
TU2615343 other upstream 76390 233742 ~ 240640 (+) True rpl30
TU2615646 other downstream 137265 486793 ~ 487391 (+) False G2287470
TU2615647 other downstream 137265 486793 ~ 487482 (+) False G2287470
TU2615648 other downstream 137265 486793 ~ 487551 (+) False G2287470
TU2615649 other downstream 137265 486793 ~ 487661 (+) True G2287470
TU2616270 other downstream 923846 1273374 ~ 1274170 (+) True G2287973

Expression Profile