RNA id: XR_005041349.1


Basic Information

Item Value
RNA id XR_005041349.1
length 1565
RNA type mRNA
GC content 0.48
exon number 7
gene id psmg2
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 476232 ~ 482157 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAACAAATATCTCCCTCGTTCTTTTATTTTAAGACTTATATTGGAACTTTCAATGAAGTTACAATTAAATATAGAAGTTTATTTTTGTCAAATcttataaatatatttaaaatgttgACTTCTATGGCAGTACAACAATATTTTTATTCAGGCATCTGATAACGCACCAACATCGACGCCATCTATGTTCTTAAAGGCCCATTTCCAGTTTGCAAGAAGTGAAAGTAAATGGGAATTTATTACAACCAAAACACTCTGAAAGTGGTTGATTGAACAGTAATTAAGTTGTTTCATTCTCAACACACATGATGTTTGTCGCGGCAGAATGCACCCCAACGTCTTTTAAAGGCTTTACCCTGATTATGCCAGCAATCTCTGTTGGAAATGTGGGGCAGCTGGCAGTGGACCTGATTGTTTCTACGCTCAACATGTGTCGAGTCGGATACATCCACACTGACTGTCTCATCCCTATGGCAGGGAACAACCCTTATGCTACATTCGCTGAGAACGCCAACGACCTCAGTACCAATGCAGAAGTGTACTCTTCTCCAGAGTTGAGGTTGGCAGTTCTTCAGATCAGAACCCCAATTATCCAGACAAAGTCCAAGAAGTTCTGTAAGCTGATGGTGTCTTGGATCAAAGCCAGTGGTTTCTCCAGGACTGTCGTGCTGTCCAGCAGTCATGCTTACCAGAGGGATGACCAACAGCTACTGGGGTCTCCCCTGCGTTACCTGCAGACTCCCTCCATGCAGAAGGTGACTGGTGACCGGCTGAAGGAGATGGATtggaaggagatggagacagtaTCTACCTTCCCTGGGGTTACTGACTCAGAGCAGCGCCTCTATATACCTGGAGGGGGCGCCACTAAAGGCCTCTTCACTGACAGCTGTGCTGAGGACATTCTTCTCCATGGTGTTGTCTCTGTGTTCCAGCTGTGCTGAGGACATTCCTCTGGTGGTGGTGCTGATCTTCTGCTCTGAAGGAGACAACATCCCAGACGCCTTCACTCTCCTCAACCACCTCAACACTTGGCTCCACCTAGTGGACGCACCTGCCCAGACGCAGCCAAAGTGGAGGATACCAGCATCATGGAGGCTTCTCTTTGGCAGTGGCATCCCCCCTGCACTCTTCTAAATCACCCAGTGGAATCTCCCCTGCCCCAACTCTCCTAAATCACCCAGTGGAATCACCCCTGCCCCAACTCTTCTAAATCACCCAGTGGAATCTCCCCTGCCCCAACTCTCCTAAATCACCCAGTGGAATCTCCCCTGCCCCAACTCTCCTAAATCACCCAGTGGAATCACCCCTGCCCCAACTCTTCTAAATCACCCAGTGGAATCACCCCCTACCCCAACTCTTCTAAATCACCCAGTGGAATCACCCCCTGCCCCAACTCTCCTAAATCACCCTGTGGAATCCCCCCTACCCCAACTCTCCCCTGCCCCAACCGGTGTTATGAGTCCAGGTTTATAGTCCTGAAGTGTGCCTAGTGGTTATCATTACCTACCCTGGTGATGAGAATCAATATTTACTCTACGGTTATTAAAAGTATTAAATCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2615622 lncRNA upstream 4598 471322 ~ 471635 (+) True G2287456
TU2615619 lncRNA upstream 7646 468146 ~ 468587 (+) True G2287453
TU2615617 lncRNA upstream 12570 463462 ~ 463663 (+) True G2287451
TU2615615 lncRNA upstream 12978 439106 ~ 463255 (+) True G2287449
TU2615613 lncRNA upstream 39006 436748 ~ 437227 (+) True G2287448
TU2615630 lncRNA downstream 403 482560 ~ 482891 (+) True G2287464
TU2615635 lncRNA downstream 1026 483183 ~ 483457 (+) True G2287466
TU2615645 lncRNA downstream 3239 485396 ~ 486605 (+) True G2287469
TU2615653 lncRNA downstream 17237 499394 ~ 549250 (+) True G2287473
TU2615662 lncRNA downstream 75748 557905 ~ 575122 (+) True G2287482
XM_036971641.1 mRNA upstream 126705 316903 ~ 349528 (+) False spire1a
XM_036971638.1 mRNA upstream 126705 317030 ~ 349528 (+) False spire1a
XM_036971640.1 mRNA upstream 126705 317030 ~ 349528 (+) False spire1a
XM_036971639.1 mRNA upstream 126705 317032 ~ 349528 (+) True spire1a
XM_021559733.2 mRNA upstream 236665 233676 ~ 239568 (+) False rpl30
XM_021559715.2 mRNA downstream 82967 565124 ~ 587159 (+) False seh1l
XR_005041297.1 mRNA downstream 82967 565124 ~ 587159 (+) False seh1l
XM_021559717.2 mRNA downstream 114605 596762 ~ 616427 (+) False rnmt
XM_021559716.2 mRNA downstream 115128 597285 ~ 616427 (+) True rnmt
XM_036971021.1 mRNA downstream 256464 738621 ~ 899937 (+) True rims2b
TU2615343 other upstream 235593 233742 ~ 240640 (+) True rpl30
TU2615646 other downstream 4636 486793 ~ 487391 (+) False G2287470
TU2615647 other downstream 4636 486793 ~ 487482 (+) False G2287470
TU2615648 other downstream 4636 486793 ~ 487551 (+) False G2287470
TU2615649 other downstream 4636 486793 ~ 487661 (+) True G2287470
TU2616270 other downstream 791217 1273374 ~ 1274170 (+) True G2287973

Expression Profile