RNA id: XM_036970994.1


Basic Information

Item Value
RNA id XM_036970994.1
length 3041
RNA type mRNA
GC content 0.52
exon number 11
gene id cbfa2t2
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 2525059 ~ 2686032 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCACTATTCTATTCCTCGTTCTAACGGCAACCGACACACAACCGGCAGGCGCGCCAAATGTGCAAGTCCGAATGCGTGGTTATTCATCTCCTCTCTAACCTAGACTAGCCTATATATCTATAAGATAAATTCATTTAATTTCAACAGTCATTTTGGAAGATAAAAAGGCTTTCAACGACGGCAAGCAGAACAGAAGAGGTAGCCTATTTGATAGCGTCGCATCATCTCCGTGTTTTCTCTCTAGCTCGACTCGAACGCCTTGAACATCAGCTCCGTTCCATCCAGAATGTTGTCTGCTGAATGAAGAATCCTTGCCACCCTGCTGTGCTGCTCATGTGTTCTGGGTTTCTGACTGACCGTTCTGACTTCTTCAGCCGTATTTTTATTGACTGAACTGATAACCATTCGTCATTCTAACATTGATTGGAGTCAGAGGCTGACTGGAAATACATTTTGCCCTCACACCATCGTAACGCATGGTGGGAATTGTGCATCTTTTCAGTATCACACTGAGAAGTGCTCCACTATGCCCGACTCACCTGCGGATGTGAAAGCACAATCCAGGTTAACTCTAGCCaccatgcctcctcctcctccaaccaccCAGGGAGCCCCTCGAACCAGCTCCTTCACACCTACTACATTAACCAACGGCAACAACAGCCACTCCCCCACGGCGTTGAACGGAGCGCCTTCGCCACCAAATGGCTTCAGCAACGGCCCTagctcctcctgctcttcctcgCTGGCCAATAAGCAACTCCCTCCAGCGTGTGGCGCCCGGCAGCTCAGCAAGCTGAAACGCTTCCTCACCACACTACAGCAGTTCGGCAACGACATCTCGCCTGAGATCGGAGAACGTGTCCGCACTCTGGTGCTGGGGCTGGTGAATTCAACGTTAACCATAGAGGAATTCCACTCCAAGTTGCAAGAAGCGACCAACTTCCCTCTCCGACCTTTTGTCATCCCGTTCCTGAAGGCCAACCTGCCACTCCTACAGCGGGAGCTGCTGCACTGTGCCCGTCTGGCCAAGCAGAACCCAGCTCAGTACCTGGCACAACACGAACAGCTCCTCCTggacacctcctccaccacctccccggTCGACTCCTCAGAACTACTCCTAGACCTCAACGACAACGGCAagaggagaacacctgacagaacCAAAGTGAACGGCTTCGACAGGGATGGCCCCCTGCACCTGGAGACCTCCAGTAAGAGACTCTGTACGATCAGCCCGGCAGGCCAACGGTTCAGCCCCTCCAACGGTCTCTCCTATCAACCTAACGGCCTGGCCCATGGACACCCCACGCCGCCCCCTCCCCCGCCCCCACAGCACTACCGGCTGGACGACATGGCCATCACACACCATTACAGAGACTCACCACACTACCGCCATCCCAACCACAACCACCGCGAGCTCAGGGAGAGACCACGGCCACTGGGAATGCACGGGGCTCGTCAGGAAGAGGTGATCGACCACCGGTTGACAGACAGAGAATGGGGGGAGGAATGGAAGCACCTTGACCATCTGCTGAACTGCATCATGGACATGGTGGAGAAGACGAGGCGTTCTCTCACCGTGCTGCGGCGCTGCCAGGAGGCCGACAGGGAGGAGCTTAACTACTGGATCAGACGATACAGCGACGCGGACGACCTGAAGAAAGGAGCCAGCAGGACTCAGAGCAGACAGCACAGTCCTACAGGACAAGACGACCTCACTACAGAGATTCACCAGGAGATTCTCAACAGACCAATGACTACCGGATACGTACCTGAAGAGATCTGGAAGAAAGCTGAAGAGGCTGTGAACGAGGTGAAGCGCCAGGCCATATCAGAGCTCCAGAAGGCGGTTTCAGAGGCGGAGAGGAAGGCCCATCAGATGATCAGCTCAGAACGGTCCAAGATGGAGCGTACGGTGGCAGAGGCCAAGAGACAGGCAGCGGAGGACGCACTGACTGTCATCAACCAGCAGGAGGACTCCAGCGAGagttGTTGGAACTGCGGGCGGAAGGCGAGCGAGACCTGCAGCGGCTGTAACACGGCGCGCTACTGCGGCTCTTTCTGCCAGCACAAAGACTGGGAGAAACACCACCACGTATGTGGCCAGACCCTCCAGGCCTCCAAGGCAGCCCAGCAGCAGGGTACAGAGACCTCCGCTCCCATCAGCTCCTCCACTACGCCCTCTAGTGGAGGAGGCAGCCCAGCCGGAACCCCGCCCATCGCCACACCCCGCTCCGGCACCCCAGGAACCCCCTGTACGCTGGAAACCACGCCGCACTAAACCGGGGGACCATCCGGGGAGCCGTCGGAAACTCCCAGTAGCACAACATGACTGGCTCACTTGATACTAAATGCTAAGGCGCTAACGCTCCGACAAGAGATGTAGACCTATCTTGGAGTAGTGGAGGCTCCACACGAGACAGGAGGTTTATACATGTAGATCAGTCACATTGACTTGCCATGATTAACAAAGAACACACAAAAATGttatttgttttaattattattattattgttgttgttgttgttatcaaTGCCCTTATTGTTGCTATTGTTATTAGCGTCCGTTGTCGtccgtttgttgttgttgttgtttattgctATTCTTTCATTCCTTTTTTTCATGTAAATATGAAGATAGAAAGTGAGTGGATAACAGCAGTGAAACTCCACACAAATACATCTGACATCTCCTTTGTTGAGTTCTGTTTTCTAAAAGCTTTGTTGTTTTCCTCTACTACCTGGGATATATGATATAAAACCAGTTGACCTCATTAAGACACCAAACAACATACCAATGGATTACTACTACAACACAAACACTGTGCAAAAAGCTGAAGCCAACTCTCTTATTATGGGAAGACCACAAATACAAagaacagactgacagactgacagagaaacagacggacagacagacagacagacagactgacagagagacagacagacagacagacagagggactgtATCTGCCAGCAGCAAGGTGCAGATATAGAGCAGATTGTAAAGGAACCACAGCTGTTCCTCTTG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046872 metal ion binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10053 RUNX1T1, CBFA2T1; CBFA2/RNUX1 translocation partner 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2617513 lncRNA upstream 11320 2513503 ~ 2513739 (+) True G2288898
TU2617448 lncRNA upstream 69901 2454939 ~ 2455158 (+) True G2288839
TU2617443 lncRNA upstream 73293 2451034 ~ 2451766 (+) True G2288834
TU2617436 lncRNA upstream 81707 2442906 ~ 2443352 (+) True G2288827
TU2617435 lncRNA upstream 82589 2442106 ~ 2442470 (+) True G2288826
TU2617659 lncRNA downstream 88452 2774484 ~ 2776139 (+) True G2289004
TU2617663 lncRNA downstream 99785 2785817 ~ 2786737 (+) False G2289008
TU2617665 lncRNA downstream 100425 2786457 ~ 2787193 (+) True G2289008
TU2617667 lncRNA downstream 102770 2788802 ~ 2789228 (+) True G2289010
TU2617694 lncRNA downstream 135858 2821890 ~ 2822153 (+) True G2289029
XM_021559745.2 mRNA upstream 269940 2209019 ~ 2255119 (+) False triqk
XM_036971306.1 mRNA upstream 269940 2209081 ~ 2255119 (+) False triqk
XM_036971305.1 mRNA upstream 269940 2209417 ~ 2255119 (+) False triqk
XM_036971822.1 mRNA upstream 631107 1892590 ~ 1893952 (+) True LOC118946536
XM_021559728.2 mRNA upstream 673809 1849460 ~ 1851250 (+) True lratd2a
XM_036970805.1 mRNA downstream 80653 2766685 ~ 2800192 (+) True pip4p2
XM_021559740.2 mRNA downstream 130444 2816476 ~ 2843878 (+) False LOC110487823
XM_021559739.2 mRNA downstream 130452 2816484 ~ 2845566 (+) True LOC110487823
XM_021559742.2 mRNA downstream 197896 2883928 ~ 2886784 (+) True LOC110487826
XM_036971624.1 mRNA downstream 244112 2930144 ~ 2992088 (+) True angpt2b
TU2617423 other upstream 143664 2380447 ~ 2381395 (+) True G2288814
TU2617238 other upstream 200877 2321874 ~ 2324182 (+) True G2288669
TU2617170 other upstream 269986 2209122 ~ 2255073 (+) False triqk
TU2618062 other downstream 374410 3060442 ~ 3060779 (+) True G2289325
TU2619328 other downstream 1762857 4448889 ~ 4449571 (+) True G2290395
TU2619392 other downstream 1860872 4546904 ~ 4548603 (+) False G2290455
TU2619393 other downstream 1860872 4546904 ~ 4548844 (+) False G2290455
TU2619394 other downstream 1860872 4546904 ~ 4548844 (+) True G2290455

Expression Profile