RNA id: XM_036970805.1


Basic Information

Item Value
RNA id XM_036970805.1
length 1492
RNA type mRNA
GC content 0.53
exon number 7
gene id pip4p2
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 2766685 ~ 2800192 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTGCCTGGGTGGAACGGGTTGGGTTGGGgtgtctggctctctctctgcattCAGTCGCTCACAACCCTCCCACCCGGTCCCGTTGAGGTCTGTGTAGCTCCACCTCCGAGGAAGTGCCCTCTCCGGAGCAGTAGGCTACCACGGATCTGCTGGCCGCCCCCTCCCAAGGAAACACTGGCCAGAGGAGAGGCTCCGCCGCATCGGCTCTACTTCTTCTCGGTGTTTATTCGTCTGGTTTGGGTGAACTGCTGCCGCCATGGCCGACGAAGGCATGGATGAACGGTCCCCGCTGCTCTCAGCACCGAACTCTGGGAATGTCACACCGTCGGGACCGCCTTCGTACCTGCAGGACACGAGCCCGAGAGCTGAACTCCCTCCCCCCTACACAGCCATCGCCAGTCCCGACCCAGGGGGGGTACCCGTCATCAACTGCCGGGTGTGTCAGTCTCTCATTAACCTGGATGGCAAGCTTCATCAGCACGTGGTGAAGTGTACTGTGTGCAACGAGGCCACGCCCATCAAAAACCCACCGACTGGGAAGAAGTATGTACGCTGTCCCTGTAACTGTCTCCTCATCTGCAAAGACTCATCTAGGAGGATAGGATGCCCCAGACCCAACTGCAGACGCATCATCAACCTGAGCCCGGTGATGGTGATTCCAGAGGAGCAGCCGGCCCAGCCGGCCCTGCCAGTCCAGCCTGAGGGCACGAGGGTGGTCTGTGGCCACTGTGGAAACGCCTTCCTTTGGATGGAGCTCCGATTTAACACACTAGCAAAATGCCctcactgcaaaaaaatATCGTCTGTGGGTAGCGCTCTTCCAAGGAGGCGTTGTTGTGCCTACATCACTGTGGGACTGATCTGCATCTTTATCGGAGTGGGATTAACAgTGGGCACTCAGGACTTTGCCAGTCGTTACCATGCCACCTATGTGTCCTGGGCGTTCTCCTACCTCCTGGGTCTGATCTGTCTGATACGAGCTTGTTACTGGGGAGCCATCAAAGTCAGCTATCCAGAGAACAGCTTTTcctagacagacagaccatcaaAGTCAGCTATCCAGAGAACAGCTTTTCCTAGACAGACAGACGGTTGTACTGTAAATCTTCCTTTAAGTTGTTCACGTTGTTGTTGTTTCGATTCTGACAGCTCCAAGGTCAGTCCGGTCACTCctggtcctggagaaaacagaaaTCCAGCCCGGGTTTTGCAATTAACTCAAGAAATCAGATCAGTAATTAAGATATTAATTGGTTCGATAAATCATAAAGTGTGATTTAAGTAATTGATATTGAAATGAAGAAACTTGACTTTGGTAAATATGATGATTACAAAGAAAGCCAGGTGGCTGGATTCCATTTCctggactggctgactgactggctgactgactgactggttgactgactgactgactgagtgactggttgactgactgactggttgactgactgactgactgactggttgactgactgactggctggctg

Function

GO: NA

KEGG:

id description
K13084 TMEM55; phosphatidylinositol-4,5-bisphosphate 4-phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2617629 lncRNA upstream 89186 2676704 ~ 2677499 (+) True G2288979
TU2617570 lncRNA upstream 185305 2579616 ~ 2581380 (+) False G2288933
TU2617571 lncRNA upstream 185305 2579616 ~ 2581380 (+) True G2288933
TU2617563 lncRNA upstream 197994 2567167 ~ 2568691 (+) True G2288926
TU2617551 lncRNA upstream 221954 2544201 ~ 2544731 (+) True G2288915
TU2617694 lncRNA downstream 21698 2821890 ~ 2822153 (+) True G2289029
TU2617706 lncRNA downstream 34587 2834779 ~ 2835420 (+) True G2289040
TU2617691 lncRNA downstream 38925 2839117 ~ 2839718 (+) True G2289026
TU2617698 lncRNA downstream 77601 2877793 ~ 2879143 (+) True G2289032
TU2617722 lncRNA downstream 93455 2893647 ~ 2902038 (+) False G2289049
XM_036970991.1 mRNA upstream 80653 2525059 ~ 2686032 (+) False cbfa2t2
XM_036970992.1 mRNA upstream 80653 2525059 ~ 2686032 (+) False cbfa2t2
XM_036970993.1 mRNA upstream 80653 2525059 ~ 2686032 (+) False cbfa2t2
XM_036970994.1 mRNA upstream 80653 2525059 ~ 2686032 (+) True cbfa2t2
XM_021559745.2 mRNA upstream 511566 2209019 ~ 2255119 (+) False triqk
XM_021559740.2 mRNA downstream 16284 2816476 ~ 2843878 (+) False LOC110487823
XM_021559739.2 mRNA downstream 16292 2816484 ~ 2845566 (+) True LOC110487823
XM_021559742.2 mRNA downstream 83736 2883928 ~ 2886784 (+) True LOC110487826
XM_036971624.1 mRNA downstream 129952 2930144 ~ 2992088 (+) True angpt2b
XM_036971823.1 mRNA downstream 360026 3160218 ~ 3181800 (+) True LOC118946537
TU2617423 other upstream 385290 2380447 ~ 2381395 (+) True G2288814
TU2617238 other upstream 442503 2321874 ~ 2324182 (+) True G2288669
TU2617170 other upstream 511612 2209122 ~ 2255073 (+) False triqk
TU2618062 other downstream 260250 3060442 ~ 3060779 (+) True G2289325
TU2619328 other downstream 1648697 4448889 ~ 4449571 (+) True G2290395
TU2619392 other downstream 1746712 4546904 ~ 4548603 (+) False G2290455
TU2619393 other downstream 1746712 4546904 ~ 4548844 (+) False G2290455
TU2619394 other downstream 1746712 4546904 ~ 4548844 (+) True G2290455

Expression Profile