RNA id: XM_021559739.2


Basic Information

Item Value
RNA id XM_021559739.2
length 3441
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC110487823
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 2816476 ~ 2845566 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGTAGTAGTCACATGATCTGGTACTTGGCATTATGGGAAACAACCAGAGCAGTGGCTGGTGGATGAATAGCGTTCAACGTCAACACCATTTACTGTTGTGGGCTGAACAAGTAATAAGACGCAGCTGGCTATCAGACGGACTTAGACAACACGGTTATCACTGTGCACCAGGAAGACAAGGTCCATGTCCGGTGACTCTGCCGGTTGGGACGGGTTTCTAGGACTTTACACAGACAGCAGCTGACCGACTCGGTGGAGTAGCAACTCGCTGCTTTTACGATCAAATAGGACAGACGACTCGCAAAAGTTGGGAGTCTTGCACGGATTTATCGTTGGACCGTTTTCGTATCGATACGAATAGTTGGCTTGATCAGCCGTTTTTTTTTAGCAATACCGTGACTTTCTGGTTTGTCGTCGTTTTGCCTCCGTTCTCCAGATTAACGGCGACCGATGCTTTTCAACGCACTGATTGTTTCATTTACGTTCGCCTTCGATTCGAGGCGATGTGGAAACGTTTTTCATAAATCATTGGACTGGCATGTCTCCCAATTTGGTGAATCCAAGATCAAGAACTGTCAGACTGGACGGTCATTCTTATGACGGCAACCCAGAGGGAAGAATTTCCTTCTGAAGCCTATGGAAACAGTTCTCCTCTATGCTGAAGAATAGACATGTGTCCCCAACACAGAAACCATCGATAACCTTCCTCCCTGTCAACACGTCACCCTAATTACCTTTCTCAGTTGTCACTGTTTATGATCAGGCGTCGTCGTTTCTACAAGATAAACGGTCATATTCAAGTTCACACCGCTCCATCTTAAATCTGGGCACAACCAGTCAGCGTGACTGTCCATCTTCCTGAGACTCCGCTGTCGTGCCACCATGTGGGGCGCAGGGTCGCCACCATCCCTGCAGGTCGTCCTAAAGGTCCTTAAACACGCTGCGGTCAAAGGACAGATCCAGCTGAACCGCTGGCTCCAGAGATCCTCCCAGGACGAGTGCGATAAAATGGACCTCTTGATATGCAACGCCTTTGACGAGAGAGGAGGCGCCGTCGGCAAGTCTGATGGAGACCCGGAGAGCATCGTTGACACTGGCGTGTCATTCACCGGTGGCGCCACCAACGGGGAGTTCAGACACCCGTGTTGTATTACCACGTGTTGCTTCAAGAGTGCCCTCCTGGCATGCATTCTGACAGCTGTGTGCTTCTCCTCCGTGGCTCTAGTCCGACAGTACCTCAAGGACCTTCTTCTCTGGGTGGAGAGCTTGGACAGCCTGGTTGGAGCCTTGCTGTTCATAGTGGGTCTGATCGTTGTGTCCTTCCCATTCGGCTGGGGCTACATCGTGCTGAACGTGGCTGCGGGATACCTCTACGGCTTCGTGCTGGGTATGGGACTGGTGATGGTGGGGGTGCTCATAGGTACCTTCGTGGCTCACCTGGTGTGTAAGAGACTGTTGACGGACTGGGTGGTCAACAAGGTGGGGAACTCTGAACAGCTCAGTGCTGTAATACGGGTGGTGGAGGGGGGAAGTGGACTCAAAGTGGTGGCCTTAGCGAGACTCACGCCCATTCCCTTTGGACTCCAGAATGCAGTGTTCTCAATCACAGACGTGTCGTTGCCAAACTACCTGGTGGCGTCGTCAGTCGGCCTGCTGCCCACACAGCTCCTAAACTCCTACCTGGGCACCACGCTGCGCACCATGGAGGACGTCATCGCAGAACAGAGCATCAGCGGATACCTTGTCTTCAGTCTACAGatcaTCATCAGTATAGGTCTGATGTTCTACGTGGTCCATCGGGCCCAGGTGGAGCTGAATGCGGCCATCGCTGCCTGTCAGATGGAGCTGAAGACATCACACATGAACGGCACTTCCACCAATCACAGCGGCTTCACGTACTGCAGCAAGAGGGCGTCGGCCGGGGGTGGGATCATCAACGTGGTCTGATAAATGTCTCAAAACCCTGATTGGGACACGAGCGACTGGGATCGAACTGAACACTGATTGGCCAGTGTAGCATTTGTGATATCTGATAGGAGTGCCTTCCACGGTGACGAGTCTGGAGTGAGGAGGACCTGCCAAATAGGGATGCTGATTGTGTGGATCTATAGGGCTTGTAGGTGCAGCTGAGGGGTGCCAGGTGTTTAGTAGTCAGGTACAGTGGTGTTCTCATCACGGACTTACGCTTCCAACACACCGACAGCgccattgcattttggtacaccagaattacattcatttccaatgaaacGGCGTtgtgcagcattgcgttgcagaggcagttgcagttcGTTCTGTGTGGTGCAGATGTTGGATTTATCGAAGGTACGTGTCAAACTGTATGAGTAGACGGCTTGACAGGATTTGGggcagaaggtgaatgttaaaCTTTGTtacacacatatccagatgatgctgtcGGTGTGTTGGAAGAGTTAACCGGAGTTCTCTATACAACACAGCTCACCATTCAGATCTCCGATACCAATGGCTTCTCTTCTACAGTGTGGGACCAGGGGCCATTGGCTTCTCTTCTACAGTGTGGGAACAGGGGCCATTGGCTTCTCTTCTACATTGTGGGACCAGGGGCCAATGGCTTCTCTTCTACAGTGTGGGACCAGGGGCCAATGGCTTCTCTTCTACAGTGTGGGACCAGGGGCCATTGGCTTCTCTTCTACAGTGTGGGACCAGGGGCCATTGGCTTCTCTTCTACAGTGTGGGACCAGGGGCCAATGGCTTCTCTTCTACAGTGTGGGACCAGGGGCCATTGGCTTCTCTTCTACAGTGTGGGACCAGGGGCCATTGGCTTCTCTTCTACAGTGTGGGACCAGGGGCCATTGGCTTCTCTTCTACAGTGTGGGACCAGGGGCCAATGGCTTTTCTTCTACAGTGTGGGACCAGGGGCCATTGGCTTCTCTTCTACAGTGTGGGACCAGGGGCCATTGGCTTCTCTTCTACAGTGTGGGACCAGGGGCCAATGGCTTCTCTTCTACAGTGTGGGACCAGGGGCCATTGGCTTCTCTTCTACAGTGTGGGACCAGGGGCCATTGGCTTCTCTTCTACATTGTGGGACCAGGGGCCAATGGCTTCTCTTCTACAGTGTGGGACCAGGGGCCAATGGCTTCTCTTCTACAGTGTGGGACCAGGGGCCAATGGCTTCTCTTCTACAGTGTGGGACCAGGGGCCAATGGCTTCTCTTCTAGAGTGTGGGACCAGGGGCCAATGGCTTCTCTTCTACAGTGTGGGACCAGGGGCCAATGGCTTCTCTTCTACAGTGTGGGACCAGGGGCCATTGGCTTCTCTTCTACAGTGTGGGACCAGGGGCCAATGGCTTCTCTTCTACAGTGTGGGACCAGGGGCCATTGGCTTCTCTTCTACAGTGTGGGACCAGGGGCCATTGCGTTGAACTCAtaatgatgaaataaataaatggtaCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2617667 lncRNA upstream 27256 2788802 ~ 2789228 (+) True G2289010
TU2617665 lncRNA upstream 29291 2786457 ~ 2787193 (+) True G2289008
TU2617663 lncRNA upstream 29747 2785817 ~ 2786737 (+) False G2289008
TU2617659 lncRNA upstream 40345 2774484 ~ 2776139 (+) True G2289004
TU2617629 lncRNA upstream 138985 2676704 ~ 2677499 (+) True G2288979
TU2617698 lncRNA downstream 32227 2877793 ~ 2879143 (+) True G2289032
TU2617722 lncRNA downstream 48081 2893647 ~ 2902038 (+) False G2289049
TU2617723 lncRNA downstream 48081 2893647 ~ 2901044 (+) True G2289049
TU2617731 lncRNA downstream 63421 2908987 ~ 2910020 (+) True G2289054
TU2617975 lncRNA downstream 82015 2927581 ~ 2927929 (+) True G2289249
XM_036970805.1 mRNA upstream 16292 2766685 ~ 2800192 (+) True pip4p2
XM_036970991.1 mRNA upstream 130452 2525059 ~ 2686032 (+) False cbfa2t2
XM_021559742.2 mRNA downstream 38362 2883928 ~ 2886784 (+) True LOC110487826
XM_036971624.1 mRNA downstream 84578 2930144 ~ 2992088 (+) True angpt2b
XM_036971823.1 mRNA downstream 314652 3160218 ~ 3181800 (+) True LOC118946537
XM_021559746.2 mRNA downstream 2157412 5002978 ~ 5011804 (+) True pef1
XM_036971384.1 mRNA downstream 2168983 5014549 ~ 5017948 (+) False smim12
TU2617423 other upstream 435089 2380447 ~ 2381395 (+) True G2288814
TU2617238 other upstream 492302 2321874 ~ 2324182 (+) True G2288669
TU2617170 other upstream 561411 2209122 ~ 2255073 (+) False triqk
TU2618062 other downstream 214876 3060442 ~ 3060779 (+) True G2289325
TU2619328 other downstream 1603323 4448889 ~ 4449571 (+) True G2290395
TU2619392 other downstream 1701338 4546904 ~ 4548603 (+) False G2290455
TU2619393 other downstream 1701338 4546904 ~ 4548844 (+) False G2290455
TU2619394 other downstream 1701338 4546904 ~ 4548844 (+) True G2290455

Expression Profile