RNA id: XM_021559742.2


Basic Information

Item Value
RNA id XM_021559742.2
length 2312
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110487826
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 2883928 ~ 2886784 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCAAACGAGTAGCGGAAGTGGAAGATGCTGGTCGTTCATCTTCGAAATGCGGTCTACAGTTATTTTATATACATCAATGGGCACAACAAGGGAATAAAATCACATCACATTGAGCAGAAGAACAACTTAAAGCTATCGAATTTCATAacgttttaataaaaaaataaataaaatctcaaAATGTCTAAACTGGAGTTGTTCAACGCGTATCTCAGTGAACGGCTGACTGCGGCGGCGAGGGAGATAACATCGGCAGTAGAGAGAACGATAACAGACTATCAGGACGAAATCTCCCGTTACAAGGAGGACAACGAACGGTTACGACTGATGCTGGATTTCAAACCACATTTACACTTAGAACCCCAACAGCTCACCTTCACAGTCTCTAAAGAGGAGGTTCCCCCTGAGCAGCAGCACTGTGAACAAGAGTGTCCCCGTATGGGGCAGCAGGTCCCAGAGCCCACACAGATTAAAGATGAACAGGAGGAAGAGCTGCTTCAAGAGTCTGATACCAAAGACTTCATTACTGTCTGTGTTGTGAGTGACTGTGAGGGCGTGAACACACGTCATGCATCCCACACTGTGGGGAGTAGAGACGGAGGTTCGCCATTCAATAACACAACtggagggatacagacagagccCGGTGATGAAGACTATATAGACTACATAGTATCAGAACCATCCAGTCCTGCAGCTCAGAGTGAAAACAGTGGGAGGGACACCGATGGCGAGAGCATGGAGCTACCGCCGGGGTCAAAGCCACGGAAATCACAAAGAAAACAGGCGAAGAAAGGAACAAGCGTTGTTGAAGATGCTTCTCCTTATTGCTGCAAGCTGTGTGGGAGGACTTTTGTTCGTATGGGTTTTTTAGTTAACCATGTGCAAAGAACACACACAAAGCATGCTGAACAATACcgttgtggtgtgtgtgaaggAGTCTTGGACTCAAAAGAAAATCTGACAGTCCACGTGCAAACCCACACTAAAGAGAGAACTACTCCTCACTCTCAAACCCACACTAAAGAGAGAACTACTCCTCACTCTCAAACCCACACTGAATCAAAAGCTTGGCACAATGCTCACCCTCAAACCCTCACTGAACCAAAACCTTGGCCCGGTGCTCACCCTCAAATCTTCACTGACCCAAAACCTTGGCACAGTGCTCACCCTCAAACCCTCACTGAACCAAAACCTAGGCCCAGTGCTTACCCTCAAACCCTCACTGAACCAAAACCCAGGCCCAGTGCTCACCCTCAAACCCTCACTGAACCAAAACCTAGGCCTACTGCTCACCGGCAAACCCTCACTGAACCAAAACCTAGGCCTACTGCTCACCCTCAAACCCTCACTGAACCAAAACCTAGGCCTACTGCTCACCGGCAAACCTTCACTAAAGGGATGCCCACTCCTCAACTTCAACCTGCAGCCAAACCTACTTGTCATGTTTGTGGCAAGTGTTTCCCTTACAATCATAATCTGAAACTACACATGCGCACTCACACAGGCGAGAGACCGTTCAAATGCAGAGAATGTGGTAAATGCTTCCGATCTAAGGGATATATGAAGGTGCACTTGAGgattcacactggagagaaactaTTCCAATGCAAAGAATGTGACAAAGGCTTCCCTACCAAGCAATACCTGACCAAACACACGCTgttccacacaggggagaaatccTACCAGTGTAAGGACTGTGGGAAAGGCTTCGACCAGAGGGAACACCTTGAACAGCACCAGTCAACTCACACGGAGGAGAAGCCATATGGTTGCATAGAGTGTGGCAAATGCTTTAAAGACACTTACCATCTGGCCAGACATAAGCTGGTTCACACAGGGGAGAGACCTTTCACGTGCACTGTGTGTGGACGGGGCTTCAGCACCCAAGGCAACCTGAAAGTTCACCAGCGGATTCACACCGGAGAGAAACCCTATCGCTGTAAACTGTGTGGGAGATGCTTTACAGGTTTTGCTAGTCTTAAATATCACTTGAACACGATTCACCATTACGACGGTGGCCTTTAAATGACGTGTCTGTCAGAAGGTGACGAACCAGAAGAACATCATTACACCATTGTGGCTTTATAGTGTCTTTTTGGTGGCAGATGTAGAACAACCGTTAGGACATAGAATCTATGAAGGAATATATGGTATACTCTAACACCTTGATTAAGGTTCAACAATAGATGTGCAACTCATCTGACacaacagatatatatatatatatatatatatatatatatatatacgtacatACTACCttttaaaagtttggggtcatttagaaattctccagtttcttggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2617698 lncRNA upstream 4785 2877793 ~ 2879143 (+) True G2289032
TU2617691 lncRNA upstream 44210 2839117 ~ 2839718 (+) True G2289026
TU2617706 lncRNA upstream 48508 2834779 ~ 2835420 (+) True G2289040
TU2617694 lncRNA upstream 61775 2821890 ~ 2822153 (+) True G2289029
TU2617667 lncRNA upstream 94700 2788802 ~ 2789228 (+) True G2289010
TU2617722 lncRNA downstream 6863 2893647 ~ 2902038 (+) False G2289049
TU2617723 lncRNA downstream 6863 2893647 ~ 2901044 (+) True G2289049
TU2617731 lncRNA downstream 22203 2908987 ~ 2910020 (+) True G2289054
TU2617975 lncRNA downstream 40797 2927581 ~ 2927929 (+) True G2289249
TU2617982 lncRNA downstream 44374 2931158 ~ 2931368 (+) True G2289256
XM_021559739.2 mRNA upstream 38362 2816484 ~ 2845566 (+) True LOC110487823
XM_021559740.2 mRNA upstream 40050 2816476 ~ 2843878 (+) False LOC110487823
XM_036970805.1 mRNA upstream 83736 2766685 ~ 2800192 (+) True pip4p2
XM_036970991.1 mRNA upstream 197896 2525059 ~ 2686032 (+) False cbfa2t2
XM_036971624.1 mRNA downstream 43360 2930144 ~ 2992088 (+) True angpt2b
XM_036971823.1 mRNA downstream 273434 3160218 ~ 3181800 (+) True LOC118946537
XM_021559746.2 mRNA downstream 2116194 5002978 ~ 5011804 (+) True pef1
XM_036971384.1 mRNA downstream 2127765 5014549 ~ 5017948 (+) False smim12
XM_036970898.1 mRNA downstream 2409025 5295809 ~ 5412625 (+) False dlgap3
TU2617423 other upstream 502533 2380447 ~ 2381395 (+) True G2288814
TU2617238 other upstream 559746 2321874 ~ 2324182 (+) True G2288669
TU2617170 other upstream 628855 2209122 ~ 2255073 (+) False triqk
TU2618062 other downstream 173658 3060442 ~ 3060779 (+) True G2289325
TU2619328 other downstream 1562105 4448889 ~ 4449571 (+) True G2290395
TU2619392 other downstream 1660120 4546904 ~ 4548603 (+) False G2290455
TU2619393 other downstream 1660120 4546904 ~ 4548844 (+) False G2290455
TU2619394 other downstream 1660120 4546904 ~ 4548844 (+) True G2290455

Expression Profile