RNA id: XM_036971624.1


Basic Information

Item Value
RNA id XM_036971624.1
length 3007
RNA type mRNA
GC content 0.50
exon number 9
gene id angpt2b
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 2930144 ~ 2992088 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAGTGCAGTGGAATAGCAGGAGTTGATTTTCAGGGGGAAGACAGCGCGACTGCAGGAGTTGGTTTTCAGGGGGAAGACTGATCCATTGCAACAGAGATTCTCTGACAACCGAAAGAGCAGCAACTTCAAGGAGTGTAACACACTGTGGATAAATTATTGAGAGTTTGCATCTGGGGGAACGAGAAGAAGcattgaagacagagagagaaagacttccGTTGTTCTTCTCTGCTCCACTTACCCtgacccttctccctctccctcactcctctccccccctGTCCTCGTCTCACCTGAGATGGACCGGCTGCTGGCCCTGGCCCTGGTCTACATGGTGTACCTGTCGACTGCAGTGATTGGCTCAGAGAAGAAGAAGCACCGGGTGCAGCATGGACCCTGCAGTTACACCTTCATTCTCCCCGAGGTGGAACACTGCCAGCCCCTCAAAGACTTCCAGGTCACCAACTCCCTCCAGAGGGACTCCCCACCACCGCCAGCCCCAGACCCAGGATCGAGTCACCCTGAGCAGGACAAAGCCCAGCCCGCTAGGTCCTCATGGCAGGAGAGGAagctggagagactggagagctCCACAGAGAATAATACACAATGGTTGCAGAAGCTGGAGAGGTCCATCCAGGAGAACCTGCATTCTGGGATGGAGGAGATGAAGACAAACGCTGTCCACACCCAGACGGCGGCCATGTTGGAGATCGGGACTAAACTCTTCAGCCAATCAGCCGAGCAGACCCGCAAATTGACAGATGTGGAGACCCAGGTGCTGAACCAGACCAGTAGAATGGAGATTCAGCTGTTAGAGTATTCTCTGTTCACTAACCGTCTAGAGAAACACGTCCTCCAGCAGAATCAAGAGATCTCACGACTCAACGATAAAAGCAGTTTGATAGAGCAGAGGTTCTCAGATTTAGAGGCCAGGCACGTTAAGGAGCTCCAGGATCttcagagggagagacagcagcTGCAGGACATGCTGGAGAGACAGAGGCGCCTGGTCACCCAGCTACATGGAGAGCTGGGGACCTCCACACACAACAGCACACTACTGCAGAAACAGCAGACTATACTGACTGACACAGTGCAGCAGCTGTTCGCCATGGTCACCCACTGCAACGAAATACCCACTACACCCAAAGAGGAGCCAGTGATCTACAGAAACTGTGCTGAAATCTTCCGATCTGGGCTCACAGAGAATGGTGTCCACAGCATACGACCCCCGAACTCTACCCgcacagtgaagGTGTTCTGTGATATGAAGACGAGAGGTGGAGGCTGGACTGTGCTGCAGCATCGTAGAGACGGAGCCGTGGATTTCCACCGTGGATGGAGGGAttacaagatgGGTTTCGGGGATCCCTCGGGAGAGTACTGGGCAGGAAATGATCTCATCCATCTGCTGACCAGCTCCCAGGAGTACAGTCTCCAGGTGCAGCTGAAGGATGACGAGGGGAACGAGGCCTACTCCCACTACGATCACTTCTATATAGACGCAGAGGACAAAAACTACAGtctccatGCCCAGGGGTTCAGTGGTACTGCTGGTCGCACCAGTAGTCTGACCCAGCCTGGGACCCAGTTCAGCACCAAGGACCGAGACAACGACCGCTGCTCCTGCAAGTGTGCCCAGATGTCTTCTGGAGGTTGGTGGTTTGAGGCGTGTGGTCCCTCCAACCTGAACGGTATCTACTACGCTGGCGTCTCCAACGTGGTCCGTTACAACGGCATCAAGTGGTACTACTGGAAGGGCGCCAGCCTCATGGCGACCATGACGACCATGATGGTTCGACCCGCAGGCTTCTGAGGGATAACAGCTGCGATAGCTGATGATTTCAAAGGGGTAGCGACTGATGACAtcaccctgactgactgactgatgagcGAATAATGAAGTTTGACAGACATTTGGAATACGATATTTGAGTGgcgattttagaaatgtttgattgATGGATATGTTTaaaggttgtttttttttctccaaaaatgtattctgttggcctcccaagtggtgcagtggtctaagacactgcatcgcagtgctagcagtgccactagagattctggggtcgagtccagtctctgtcgcagccggaccgcgaccgggagacccatggggcggcgtgCAATTGGCCTAGCATAgtttgggttaggggagggtttgggaggtccttgtcccatcgcgctctagcgactcctgtggcgggccgggcgcagtgcaagctgacacggtcgccaggtgtacggtgtttcctgcGACACATCGGTGCGGCTGGCtcccgggttaagtgggcattgtgtcaagaagcattgCGGCTTGTTCTGGTTGTGTATCCGAGGAAGCACGGCTCCcgaccttcacctctctcttcacctctcctgagtccgtacaggagttgcagcgatgagacaagactgtaactaccaattggttaccacgaaattggggagaaaaaggggtattaacattttaaaaaaaatgtgaacaTGTATTCTGTTTTAGAGATTTTTCCCACTAAAATGGCACATAGGCAACAACTTAAACATGTGTTTTCTAATGTAATTGTACTGTGACTTCAGTtatttgttgttacagcctgatttctgaatggattaaatatattttttctcaacCATCTATGTACCATAACAACAAAGTgaaaattatgtttttagaaaaatgaaatacagaaatatctcattcacataagtattcacacccctaagtcaatacttagtagaagcacctttgacatcgattacagctgtggagaagtctttaagagctttccacacccattattcttttcaacaaTCTTCAAGCTCTGTTCAATTGGCTGTTGATAACCTTTTCCACGTCTTGCCGttgattttcaagtagatttaagtcaaaactgttactatgtcattcaggaacattcactgtcatcttggtaagctactccagtgtatattggccttgtgttttaggttactgttttaggttactg

Function

GO:

id name namespace
GO:0001568 blood vessel development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2617975 lncRNA upstream 2215 2927581 ~ 2927929 (+) True G2289249
TU2617731 lncRNA upstream 20124 2908987 ~ 2910020 (+) True G2289054
TU2617722 lncRNA upstream 28106 2893647 ~ 2902038 (+) False G2289049
TU2617723 lncRNA upstream 29100 2893647 ~ 2901044 (+) True G2289049
TU2617698 lncRNA upstream 51001 2877793 ~ 2879143 (+) True G2289032
TU2618034 lncRNA downstream 3455 2995543 ~ 2995768 (+) True G2289297
TU2618048 lncRNA downstream 21414 3013502 ~ 3013937 (+) True G2289311
TU2618069 lncRNA downstream 141911 3133999 ~ 3134204 (+) True G2289332
TU2618115 lncRNA downstream 186649 3178737 ~ 3179016 (+) True G2289374
TU2618131 lncRNA downstream 204740 3196828 ~ 3197301 (+) True G2289390
XM_021559742.2 mRNA upstream 43360 2883928 ~ 2886784 (+) True LOC110487826
XM_021559739.2 mRNA upstream 84578 2816484 ~ 2845566 (+) True LOC110487823
XM_021559740.2 mRNA upstream 86266 2816476 ~ 2843878 (+) False LOC110487823
XM_036970805.1 mRNA upstream 129952 2766685 ~ 2800192 (+) True pip4p2
XM_036970993.1 mRNA upstream 244112 2525059 ~ 2686032 (+) False cbfa2t2
XM_036971823.1 mRNA downstream 168130 3160218 ~ 3181800 (+) True LOC118946537
XM_021559746.2 mRNA downstream 2010890 5002978 ~ 5011804 (+) True pef1
XM_036971384.1 mRNA downstream 2022461 5014549 ~ 5017948 (+) False smim12
XM_036970898.1 mRNA downstream 2303721 5295809 ~ 5412625 (+) False dlgap3
XM_036971692.1 mRNA downstream 2516913 5509001 ~ 5525069 (+) False LOC110513117
TU2617423 other upstream 548749 2380447 ~ 2381395 (+) True G2288814
TU2617238 other upstream 605962 2321874 ~ 2324182 (+) True G2288669
TU2617170 other upstream 675071 2209122 ~ 2255073 (+) False triqk
TU2618062 other downstream 68354 3060442 ~ 3060779 (+) True G2289325
TU2619328 other downstream 1456801 4448889 ~ 4449571 (+) True G2290395
TU2619392 other downstream 1554816 4546904 ~ 4548603 (+) False G2290455
TU2619393 other downstream 1554816 4546904 ~ 4548844 (+) False G2290455
TU2619394 other downstream 1554816 4546904 ~ 4548844 (+) True G2290455

Expression Profile