RNA id: XM_036971823.1


Basic Information

Item Value
RNA id XM_036971823.1
length 537
RNA type mRNA
GC content 0.62
exon number 3
gene id LOC118946537
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 3160218 ~ 3181800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGATAATGTTCAGCTTAGAGGATAGTGTCAGCCTAGCCTGCACCAGTCCCATCAGCACTGCACCAGTCCCAGCAGCACTGCACCAGTCCCATCAGCACGGCACCAGTCCCATCAGCACTGCACCAGTCCCATCAGCACTGCACCAGCCCCATCAGCACTGCCTCAGTCCCATCAGCACTGCACCAGTCTCATCAGCACTGCACCAGTCCCAGCAGCACTGCACCAGTCCCATCAGCACGGCACCAGTCCCATCAGCACTGCACCAGTCCCAGCAGCACTGCACCAGCCCCATCAGCACTGCAGCAGCCCCATCAGCACTGCACCAGGCCCATCAGCACTGCACCAGCCCCATCAGCACTGCACCAGTCCCATCAGACCCTGAAGGACGTCACCCTCAACTGCAGGCCCAGCACCTCACACATGAGCAACAGAGCAACGGACACCCAGCCCTGACCAGCGAGACCccctcccagaccagcgagaccccATCCCAGGCCAGCGAGACCccctcccagaccagcgagaccccATCCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2618069 lncRNA upstream 26014 3133999 ~ 3134204 (+) True G2289332
TU2618048 lncRNA upstream 146281 3013502 ~ 3013937 (+) True G2289311
TU2618034 lncRNA upstream 164450 2995543 ~ 2995768 (+) True G2289297
TU2618002 lncRNA upstream 170972 2989008 ~ 2989246 (+) True G2289274
TU2618001 lncRNA upstream 171818 2988060 ~ 2988400 (+) True G2289273
TU2618131 lncRNA downstream 15028 3196828 ~ 3197301 (+) True G2289390
TU2618133 lncRNA downstream 15835 3197635 ~ 3197987 (+) True G2289392
TU2618179 lncRNA downstream 63175 3244975 ~ 3249937 (+) True G2289431
TU2618181 lncRNA downstream 70140 3251940 ~ 3252205 (+) True G2289433
TU2618184 lncRNA downstream 92883 3274683 ~ 3275184 (+) True G2289436
XM_036971624.1 mRNA upstream 168130 2930144 ~ 2992088 (+) True angpt2b
XM_021559742.2 mRNA upstream 273434 2883928 ~ 2886784 (+) True LOC110487826
XM_021559739.2 mRNA upstream 314652 2816484 ~ 2845566 (+) True LOC110487823
XM_021559740.2 mRNA upstream 316340 2816476 ~ 2843878 (+) False LOC110487823
XM_036970805.1 mRNA upstream 360026 2766685 ~ 2800192 (+) True pip4p2
XM_021559746.2 mRNA downstream 1821178 5002978 ~ 5011804 (+) True pef1
XM_036971384.1 mRNA downstream 1832749 5014549 ~ 5017948 (+) False smim12
XM_036970898.1 mRNA downstream 2114009 5295809 ~ 5412625 (+) False dlgap3
XM_036971692.1 mRNA downstream 2327201 5509001 ~ 5525069 (+) False LOC110513117
XM_036971693.1 mRNA downstream 2327201 5509001 ~ 5525069 (+) True LOC110513117
TU2618062 other upstream 99439 3060442 ~ 3060779 (+) True G2289325
TU2617423 other upstream 778823 2380447 ~ 2381395 (+) True G2288814
TU2617238 other upstream 836036 2321874 ~ 2324182 (+) True G2288669
TU2617170 other upstream 905145 2209122 ~ 2255073 (+) False triqk
TU2619328 other downstream 1267089 4448889 ~ 4449571 (+) True G2290395
TU2619392 other downstream 1365104 4546904 ~ 4548603 (+) False G2290455
TU2619393 other downstream 1365104 4546904 ~ 4548844 (+) False G2290455
TU2619394 other downstream 1365104 4546904 ~ 4548844 (+) True G2290455
TU2619856 other downstream 1832856 5014656 ~ 5018314 (+) True smim12

Expression Profile