RNA id: XM_021559746.2


Basic Information

Item Value
RNA id XM_021559746.2
length 2111
RNA type mRNA
GC content 0.51
exon number 6
gene id pef1
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 5002978 ~ 5011804 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCACCCCCCATAGACGAACgcgtcagcgtgcatgcgcccggcctgccacaggagtcactagaaagcgacgggacaaggacatcccgtcCGGCTAAACCGTCCCGCTGGGGCAATTGTGTGTCACCTCATCGGTCTCTTGATTTGATtcgatACGCGTTGGACGTGGGTGTGGTTTTGACTGACAAGCCAAATGCGCCAATCCGCTTCGAGAAGGTGGTTGACTGTATTCTGTGCGGATACGTGGGTATCGAAGTTCTTTTCGAAATGAGTTTCCACTACGGCCAGGGTTATCCAGGAGGACAAGCTGGAGGGGCTAACTTCCCCCGTCAACACCCACCCCCTGGTGCTCCGTATGGGGGTAGTGCTCCACCTGGTGGCCCCTCTCCCCACGGATCTCCATACGGGGGTAGTGCTCCACCAGGACAGTATGGAGGCTCTGGCCCATCGGGCTACGCCCCGTACGGGGGAGCGACCGCCCCTCCAGGGAGTCAAAATGCTGGAGGGGCTGCACCAGGAGGGCCCTACGGGGGCTATGGGGCCCCAGGACAGGGGAGGCAGGCTGGGGGAGCACCAGGGGCCCCATACGGAGGGGGGCAGACCCCTGGAGGGCCCTATGTTGGGGGGTATGGAGGACAGCCACAGGGAGGGCCCTATGGACAGCAGTCTTCAGCAGgTAACATACCACCAGGGGTGAACCCAGAAGCATACCAGTGGTTCCAGACAGTGGACACCGATCATAGCGGCTCCATCACTCTAAAGGAACTGAAACAGGCTCTGGTCAACTCCAACTGGTCAGCCTTTAACGACGAGACCTGCCTTATGATGATCAACATGTTTGACAAGACCAAGTCTGGCCGTATCGACCTGTTTGGGTTCTCAGCCCTGTGGGTCTTCATGCAACAGTGGAGACAGCTGTTCCAACAGTACGACCGCGACCGCTCCGGCTGCATCAGTGGCACTGAGCTACACCAAGccctgtCCCAGATGGGATATAACCTGAGTCCCCAGTTCACTGAGACGATAGCGGCTAAGTACGCTGTGAGCTCTGGGCGTCCTGGTTCCCTGCAGCTAGACTCGTTCATCCAGGTGTGTACACAGCTACAGAGCATGACGCAGGCCTTCAGGGAGAAGGACTCCGCCATGACAGGAAACATACGCATGAGCTACGAAGACTTCCTCTCCACCACCGTCAACAGGCTCATGTGAGAGGGACAGATGGTGATGTTCACCTCCCAGTGGTGGCTGGTGACATTTTACATGGGGTGGGCACAGGCTTTTATAGTATCATCTTTTTGATTTACTCCATTCCAGTTGTTATTTTGAGCTGTCCTCCCTTCACCAGCCTCCGGTGCCAGCCACCAATAATAGGCAAAAAGGGTCCACCTAAAGCCAACACCCTGAAATCAAGATGGAGGACAAATGAGTCAAACTGAGGATGAGGAAATGGAGGAGactaggggagaggaggagatacaattaatcactctcttcgtctctctgtgtgtgtgtgtgtgtatcacacaCAAGGGTATggagtcatatatatatatatatatatatatatatattcctactGCAGACCTGCTCACAAGCATCCTTAATATGTCAACTCCAGGACTTGATTTGCATGATGGAACTTGATGTGCCATTTTAACCTCATGTGTAGTGTCAATCTCATAGGGCCAGTTTCCTGAACCAAGATTAAGCCTCATCCTGGACTACAAAGCATTTTCAGTACAGATTCCCAATTGccaatgctttttagtccagggcGAACTCTTAATCTTGGTCTAGGAAACCGGCTCAAAGTATAGCTGGGTATCAGTTACATTGCATGTATGACACTCGGTACACCCGAATAATGCGCCAGAGCCAATTTTTTAATAATTTTGACAACATAGCTTTACTCCAAACCACTACCGTATCTGCTGGTAGCTGTGATGGTTATGACTGTTGATGATCACCGTTGCACATTGTCGCACAGTTATATTTCAGCCATTGGATAGTTCAGGACCAATCTGTCtttgaattataattttttttaaattaaatgtattgtttactgCCATAACTTGAAATTGTATTCTAATAAAGTTTTCAAAACttgaaa

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23905 PEF1; peflin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2619832 lncRNA upstream 9165 4993498 ~ 4993813 (+) True G2290848
TU2619822 lncRNA upstream 16010 4986717 ~ 4986968 (+) True G2290838
TU2619815 lncRNA upstream 42335 4960395 ~ 4960643 (+) True G2290831
TU2619805 lncRNA upstream 49777 4952998 ~ 4953201 (+) True G2290821
TU2619795 lncRNA upstream 55579 4945654 ~ 4947399 (+) True G2290812
TU2619853 lncRNA downstream 420 5012224 ~ 5012658 (+) True G2290867
TU2619858 lncRNA downstream 1631 5013435 ~ 5013733 (+) True G2290872
TU2619940 lncRNA downstream 73032 5084836 ~ 5085092 (+) True G2290933
TU2619945 lncRNA downstream 83168 5094972 ~ 5095182 (+) True G2290938
TU2619964 lncRNA downstream 97767 5109571 ~ 5109858 (+) True G2290955
XM_036971823.1 mRNA upstream 1821178 3160218 ~ 3181800 (+) True LOC118946537
XM_036971624.1 mRNA upstream 2010890 2930144 ~ 2992088 (+) True angpt2b
XM_021559742.2 mRNA upstream 2116194 2883928 ~ 2886784 (+) True LOC110487826
XM_021559739.2 mRNA upstream 2157412 2816484 ~ 2845566 (+) True LOC110487823
XM_021559740.2 mRNA upstream 2159100 2816476 ~ 2843878 (+) False LOC110487823
XM_036971384.1 mRNA downstream 2745 5014549 ~ 5017948 (+) False smim12
XM_036970898.1 mRNA downstream 284005 5295809 ~ 5412625 (+) False dlgap3
XM_036971692.1 mRNA downstream 497197 5509001 ~ 5525069 (+) False LOC110513117
XM_036971693.1 mRNA downstream 497197 5509001 ~ 5525069 (+) True LOC110513117
XM_036971451.1 mRNA downstream 580308 5592112 ~ 5615373 (+) True LOC110489357
TU2619393 other upstream 454134 4546904 ~ 4548844 (+) False G2290455
TU2619394 other upstream 454134 4546904 ~ 4548844 (+) True G2290455
TU2619392 other upstream 454375 4546904 ~ 4548603 (+) False G2290455
TU2619328 other upstream 553407 4448889 ~ 4449571 (+) True G2290395
TU2618062 other upstream 1942199 3060442 ~ 3060779 (+) True G2289325
TU2619856 other downstream 2852 5014656 ~ 5018314 (+) True smim12
TU2620245 other downstream 372847 5384651 ~ 5401262 (+) False dlgap3
TU2620246 other downstream 389624 5401428 ~ 5407508 (+) True dlgap3
TU2620241 other downstream 405028 5416832 ~ 5418238 (+) False G2291194
TU2620244 other downstream 405028 5416832 ~ 5418238 (+) True G2291194

Expression Profile