RNA id: XM_036970898.1


Basic Information

Item Value
RNA id XM_036970898.1
length 4373
RNA type mRNA
GC content 0.59
exon number 13
gene id dlgap3
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 5113201 ~ 5412625 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aGATTCCTGACTGACAGAGTGTGTGAGCGCTACAGTGGACTAGGGGATCAGTCTTGtggactgtgtgtttgtgagaagTCCTTTCTGCAGACATGGAGACCCATTTCCTGATGAGAGTGTTGTGAGTCCGTTGCAGCCCTGTCACGCCCACAGCGTCCCCTCTCGGCCCAGGCGGCCCACCACGGCCCCCTGGCCTCCTCCATGAAGGGTTACCAGGTCAGCCGCAGCCTGTCCCAGTACTCCTCTGTTGGAGAAGGGACACACACACCGTGTGACTGCGACCCTGACCCCCGCTCCGTCCGAGACTACGAACACTACGACGGAGCGGGACACCCCTACTACCCCCCCGGGGGTCCCCCAGAGCatcgtttcctctcctctcactctggAGGGGGGACGTTCCCCCGTTCCCACCCCAGCCATCACCCCGTGCCCCATCAGTACGACTCATGCGAAGAGTGCCTGTCCACGGTTGGGGGTCACGTGGCTAAGATGCACAGCCTGGATCAGTTTGAGAGGCAGCTTCCTCCTGACGGGTTCCACACCCTGCAGTACCAGAAGAGCGCCAGCGGGGCGGAACAGCGCGGCGAGAGCCCCTCCCGTATCCGCCACCTGGTTCACTCAGTCCAGAGACTCTTCGCCAAGTCCCACTCCCTCGAGGCGCCGTCGAAGAGGGAATACAACGGCACACGAGGAGGAGGGGATTAccgggaaagaggaggaggaggagaagaaaggagcggaggagaggagggcgTTGGGCATCATTATTCGGGCCACCAGTCCCGCTCGGTGAAGCGCAGCAAGTCTCGCGAGCGCTCCAAGAGCGGGGATGGGCGCCACGAGTCGTCCGGTCGGCGCCACCGGAACCGAACTGCCGGGTGGTGGAGCTCCGACGACAACCTAGACAGTGACAGCAGCTTTCTGGTAACCGCAGGCAACGCCGGGCCAGGTGGTCGAGGTGGCGGTCCAGGTGGCGGGCGAGGTGGCCACGAGAGTCTGGACGCTGCTATCCAGGAGCTGACCATGAAGAAACTGCCCAAGCAGGGGAGTGTACCACCAGGGCCCGGACCGGGGGAGTGCATGGCCTGTACCACTCTGGCCCTGGCAGGGGGGGAGGGTGGCGGAGGGGGAGTGGCAGGGTACCATGGAGGGCCAGGACAACACTCTTTGAAGAGGAGCACGTGGTCGGCCATGACGGTCAGCCAGGCTAGAGAGGTGTACCCATCGTCTGtccggggaggaggaggaggaggaggctatGACAAGGCCTTGGTACCTCTGGAGAACAAACTGAAGGAGAGGACCTTTCACTACCTACagGTCCCGTCAGACGGGGTGGAGTGGGCTGGGCTTGGGGGCTACCCAGGCGGGGGTGGTCCTgacggaggaggaggggagatccCCTGCAGGCGCATGCGGAGCGGCAGCTACGTCAAGGCCATGGGAGACGACGACAGTCAGGACTCTGACGCCAGTCCTAAATCCTCTCCTAAAACCACTATTATCGCCCAGAGAGAGGCCTTCAGACGCTCTGTCAGCATGGACCACAGatACTCGTGTAAGCAGTGTGTAGATGCTACGCTACCATATGCTCACAACATAAGCACGCCGAAGAGTCACGCACGCTCTCGGAGCTACACGCGGTCTCTGACCAGCTCACAGtTGGGTGACTCTCTGAATCGTCAGTTTGAGGCGGTGTGTGAGACCATGTttggagagatagagagtcagGCGGTGGAAGCCTTGGATCTGCCTGGCTGCTTCCGGACCCGTTCCCATAGTTACGTCCGCGCCATCCAGGCCGGCTGTTCCCAAGACGACGACTGCCTGTCCGTCTTCTCCATGTCAGGACCCAGCATCAAGGGAGGggttgtcatCCCATACCGTAAGGCtggccctccccctctccctccccgtATGTCTAAGCCTACGATCTCTGTGAGGGCTCAGAGCAGTACAGAGTCTACCCAGGATGCCTACTTCCAGAACACAGGCCAGCCTGCCCTGGGACGGCCCAGACAACACCAGAGCAGCTCTGTGGACCTGGGAATCACTGATGTTGCAGTGTCTGGTCAGACCTCCAGGGGATCCAGGGAAAGGGGTTGCTACACAGGACCAGGACAAGGCCGCTCCCGCCAGCACTCCAACTCTGCCGAGAGCCTGGATGGTGGCCCCCGGTGGGGCAGGGAGCTTGTACTCTATGGAGTTGGAGGACAAGGGCCCCCCAGAGTAAAACACAGCGGCTCCGCTGATAGTCTCTTGGAGGGGcccaggggaaaggagaggggggagagggatgtgGGACGGGCAGGGGGAAGTCTGGGGAAGTCTGCCTCCCTCCCACAGAACAGTATGGTGCTGAGcaagatgggaggaggaggaggaagaggaggaggacaggaggagaacaagacggagagaagaggaaggaattGGAGGCCGTCTATCGCTATACAGgtggaCAGCTCGGAGACCCTGTCAGACTCAGAACCGGATGgcaaggctctgagagaggttcACTCTATAGGGGTGCAGGTGGAGGAGGACAAGAGacGTGCTCGGTTCAAGCGCTCCAACAGTGTGACGGCCAGCGTCCAGGCAGACCTGGACCCAGAGGGCGGTTACCCGGGCCTCACCTTCGCTGTTCCTACCCAGGATAAGAGCCTCCAGTTCGGCTGCTCCTTCCAGAGACACTCCTCAGAGCCAGAGTCAGCCGACCAGTACGCAGAGTACCACCGCACGGTGCACACCCAGGGCCAGTGGGCCTACAGAGAAGACTATGTCCAGGATGGTTACGCTACAGACCCCCACCAGATCCCCCCGCTGCCCCCGCGGGCCCACTCCCCCCTGCCCCTCGCTGCAGACCGTGGTGGCTGGATAGGCACACCCCAGCCCTCACTGGAGGGGGGTCTCCGTAGTCTACCTGATTCCGGTCGCGCCTCGCCCTGTCTGAGAGACGGAGAGTTCTTCCTACGCCTCCTtcagacagaggtggagaggatggagggatggtgtcAGAACAtggaaagagaggcagaggagaacGAGCTGCCGGAGGAGgTTCTGGAGCTGATCCGTAATGCGGTGGGCAGTGCCCAGATGCTCATGACCCAGAAGGTCCAGCAGTTCTTCCGTCTGTGCCAGCAAAGCGTGgACCCGTTGGCGTACCCCCAGCCCACCTCTCAGGACCTGTCCGGGCTCTGGGACCTGCTCCAGCTCAACGTGGAAGACGTCAAGGGCAAGTTCCAGCACCTCCAGAGGCTCAAGGACTCCGGCTGGAGGCTTCCCCCAGACAAGAAAGATGACAAGAAGCTTCCTCCCCCACTACCAAAGAAGCCAGCTGGGGGGGTGAGCGGCAGTCTCCGTGCCGACAGCGTCAGCGACCTCTCAGTGGAACGAGGGGTAGGAGGAGGCGGAGGGGTGCTGGTGATGCCCCGTAGCGGGGGTGTGGGACGGGCCGTGCCTGTCCGGGAGAAGTCCTTAGACctgggggacagacagaggacGGAAGCACGCAGGAGACTGCTCCAGACCAAGAGGTCCTCTTCCTTCAGACAGAACTCAGCCACGGAGAGCGCCGACAGCATCGAGATCTACATCCCAGAGGCTCAGACCCGGCTCTGAACATGGAGATACAGCCCTTTATCCCAGTGAACAGAACCGACTCTGAACATGGGTGGAGATTTACATCCCGAGGCTCAGACACTGAACATGGACATATAAGGAGACCCGTATCAGACTTCTATCCTAACCTACAAGAACTTGAGATCTACAGATCTGACTCTGAACACTGGGACCGTTCTAAACGTGGCCCTATAACCTCCTATCGGACCACTAGACTACCCTAGATCAACAACAACCCTCCCAAGTCCCATACACTGAACCCCCTCAATGATGATGTTgaccaggggtgggcaactccagtcctccaggacaCGGTTGGTTTCACACTTTTTCCCCTTCCCTagaaaacacagctgattaatcaaatgtcATTCTAAACCGAAGATCATGATTCGGTGATTATTGAAGTCAGGTTTGTTAGCTGGggaaaaactgtgacaccaatcagacaCACCGGAGGATTGGAATTACTCACCCCTGATATAGAGCCATACCAAATGTCTCATCCCTTCAGTTCTGACCTGCATCTCTCTGCGtatactgactctctctctcaagccTTTACTGCTGGGAATGCTGGGTCCCATCATCATGCCATTCCAGGACATGGCAAGACAGAAGGAGTGAACACGAGGCGACAGCGGCCATTTTGTGGAATCTGGAGCCAAAATGGAGGCTACAGGATCATAGTTGGCTCCACTCGCATTTCTCCTCAtctttttttggcagaaataaaatggagagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2620075 lncRNA upstream 9479 5285564 ~ 5286330 (+) True G2291049
TU2620020 lncRNA upstream 11752 5181158 ~ 5284057 (+) True G2291000
TU2620049 lncRNA upstream 80162 5214625 ~ 5215647 (+) True G2291025
TU2620050 lncRNA upstream 80499 5213403 ~ 5215310 (+) False G2291025
TU2620039 lncRNA upstream 95770 5199476 ~ 5200039 (+) True G2291016
TU2620238 lncRNA downstream 61 5412686 ~ 5413092 (+) True G2291193
TU2620235 lncRNA downstream 3551 5416176 ~ 5416762 (+) True G2291192
TU2620242 lncRNA downstream 4207 5416832 ~ 5418238 (+) False G2291194
TU2620277 lncRNA downstream 40028 5452653 ~ 5466304 (+) True G2291213
TU2620281 lncRNA downstream 49116 5461741 ~ 5462301 (+) True G2291215
XM_036971384.1 mRNA upstream 277861 5014549 ~ 5017948 (+) False smim12
XM_021559746.2 mRNA upstream 284005 5002978 ~ 5011804 (+) True pef1
XM_036971823.1 mRNA upstream 2114009 3160218 ~ 3181800 (+) True LOC118946537
XM_036971624.1 mRNA upstream 2303721 2930144 ~ 2992088 (+) True angpt2b
XM_021559742.2 mRNA upstream 2409025 2883928 ~ 2886784 (+) True LOC110487826
XM_036971692.1 mRNA downstream 96376 5509001 ~ 5525069 (+) False LOC110513117
XM_036971693.1 mRNA downstream 96376 5509001 ~ 5525069 (+) True LOC110513117
XM_036971451.1 mRNA downstream 179487 5592112 ~ 5615373 (+) True LOC110489357
XM_021562074.2 mRNA downstream 219672 5632297 ~ 5641547 (+) True slc6a18
XM_036971729.1 mRNA downstream 232558 5645183 ~ 5677904 (+) True LOC110489437
TU2619856 other upstream 277495 5014656 ~ 5018314 (+) True smim12
TU2619393 other upstream 746965 4546904 ~ 4548844 (+) False G2290455
TU2619394 other upstream 746965 4546904 ~ 4548844 (+) True G2290455
TU2619392 other upstream 747206 4546904 ~ 4548603 (+) False G2290455
TU2619328 other upstream 846238 4448889 ~ 4449571 (+) True G2290395
TU2620241 other downstream 4207 5416832 ~ 5418238 (+) False G2291194
TU2620244 other downstream 4207 5416832 ~ 5418238 (+) True G2291194
TU2620290 other downstream 58938 5471563 ~ 5472153 (+) True G2291219
TU2620425 other downstream 311699 5724324 ~ 5738945 (+) False wipf3
TU2620421 other downstream 311761 5724386 ~ 5738945 (+) False wipf3

Expression Profile