RNA id: TU2619972


Basic Information

Item Value
RNA id TU2619972
length 327
lncRNA type sense_over
GC content 0.51
exon number 3
gene id dlgap3
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 5113201 ~ 5412625 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagaggaagctcaGACAGCGAGCAGCGGAGGAAATAACGGATCTGCTTCTTCGCTGGatttctctcttctcatccttACCGACGTGGAGAACCAACCCGAGGAATACTGGTGTTTATTCAAAACGAAGAAAACGAGTCTAAATCCCCGCCGATCCCACACGTCTCAACCACAAGATTCCTGACTGACAGAGTGTGTGAGCGCTACAGTGGACTAGGGGATCAGTCTTGtggactgtgtgtttgtgagaagTCCTTTCTGCAGACATGGAGACCCATTTCCTGATGAGAGTGTTGTGAGTCCGTTGCAGCCCTGTCACGCCCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2619964 lncRNA upstream 3343 5109571 ~ 5109858 (+) True G2290955
TU2619945 lncRNA upstream 18019 5094972 ~ 5095182 (+) True G2290938
TU2619940 lncRNA upstream 28109 5084836 ~ 5085092 (+) True G2290933
TU2619858 lncRNA upstream 99468 5013435 ~ 5013733 (+) True G2290872
TU2619853 lncRNA upstream 100543 5012224 ~ 5012658 (+) True G2290867
TU2620228 lncRNA downstream 5736 5380077 ~ 5380283 (+) True G2291186
TU2620249 lncRNA downstream 11024 5385365 ~ 5386056 (+) True G2291198
TU2620238 lncRNA downstream 38345 5412686 ~ 5413092 (+) True G2291193
TU2620235 lncRNA downstream 41835 5416176 ~ 5416762 (+) True G2291192
TU2620242 lncRNA downstream 42491 5416832 ~ 5418238 (+) False G2291194
XM_036971384.1 mRNA upstream 95253 5014549 ~ 5017948 (+) False smim12
XM_021559746.2 mRNA upstream 101397 5002978 ~ 5011804 (+) True pef1
XM_036971823.1 mRNA upstream 1931401 3160218 ~ 3181800 (+) True LOC118946537
XM_036971624.1 mRNA upstream 2121113 2930144 ~ 2992088 (+) True angpt2b
XM_021559742.2 mRNA upstream 2226417 2883928 ~ 2886784 (+) True LOC110487826
XM_036971692.1 mRNA downstream 134660 5509001 ~ 5525069 (+) False LOC110513117
XM_036971693.1 mRNA downstream 134660 5509001 ~ 5525069 (+) True LOC110513117
XM_036971451.1 mRNA downstream 217771 5592112 ~ 5615373 (+) True LOC110489357
XM_021562074.2 mRNA downstream 257956 5632297 ~ 5641547 (+) True slc6a18
XM_036971729.1 mRNA downstream 270842 5645183 ~ 5677904 (+) True LOC110489437
TU2619856 other upstream 94887 5014656 ~ 5018314 (+) True smim12
TU2619393 other upstream 564357 4546904 ~ 4548844 (+) False G2290455
TU2619394 other upstream 564357 4546904 ~ 4548844 (+) True G2290455
TU2619392 other upstream 564598 4546904 ~ 4548603 (+) False G2290455
TU2619328 other upstream 663630 4448889 ~ 4449571 (+) True G2290395
TU2620245 other downstream 10310 5384651 ~ 5401262 (+) False dlgap3
TU2620246 other downstream 27087 5401428 ~ 5407508 (+) True dlgap3
TU2620241 other downstream 42491 5416832 ~ 5418238 (+) False G2291194
TU2620244 other downstream 42491 5416832 ~ 5418238 (+) True G2291194
TU2620290 other downstream 97222 5471563 ~ 5472153 (+) True G2291219

Expression Profile