RNA id: XM_036971692.1


Basic Information

Item Value
RNA id XM_036971692.1
length 1668
RNA type mRNA
GC content 0.56
exon number 5
gene id LOC110513117
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 5509001 ~ 5525069 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaacagagggacagaggaagagagggacagagggacagaggaacagagggacagagggacagaggaacagagggacagagggacagagggacagagggaagagagataaaGGAAAAGAACACGTTAATTGAGAAATACCGGAGAAATTCACATTCCCAGACGACACGAAGACGGAGGGGGAAATACTATTGTTCAAAGAGGTctagaacaagagaaagagagagagagagacagagagagagtgagagagagagactgagagagagagagagagagagacagagagagagtgagagagagagagagactgagagagagagagagagagagagagagagagagagagagagagacagagagagagagaggggaacagcgTCCCATTGACTCCACAGGGTACACATTCTCTACTGCGTCAGCAGAACAGAAGGAGTGATCCTCCACACACTTCTCCTTtcatccaaccatccatccatctgtctgtctgtccatctagtgAAGAATAGGAGGAGAGATGAAGACATCTCATAATGACTATAGTTCTCCAGACTCTGATGACATGGACGGGCTGATCGATGTGGGACAGGAAGACGGCTCCTGTCCAGTCACTGGGTCCATGTCCCCAGGTAGCACGTCCCAGATTCTGGCccggaagaagagaagagggATTATAGAGAAGAGGCGCAGAGACAGGATCAACCACAGTCTATCAGAGCTTCGGAGACTGGTGCCCAGCGCCTTGGAGAAACAGGGCTCGTCTAAGCTGGAGAAAGCAGAGATTCTGCAGATGACGGTGGACCACCTTAAGCTGCTGCATGCCATGGGGGGCAAAGggtaCTTTGAAGCGCGGGTCCTGGCTGTGGACTATAGGACCCTGGGATTCAGACAGTGTGTAGGAGAGGTGGTTCGGTACCTGGGCTCTTTAGAAGGAGGGGTGGACTCCCCGGACCCTATCGGAGCCCGCCTGGTCTCCCACCTCTCCCACTGCGCCAGCCAGCTGGACCCCCTTCTCCTTCAGTCGCCCCCCACCTCCTCCGCCCTCCCTTTTCCTCCCTGGCCGTGGATCTCCTCCTATCACCAGATGTCACCTGTCTCGTCTCCcacctctccatctttctccgcGAGGCGGAGGGAGCTGGCACGCCTGGGGGGTGGGTGTTATCCATCCCGCTCAGCCGACACCCTGTGTCTCGCCCCCCTGGGGTGCCAACAGGGGTCCATGCTCGCCCCTGCCTTGGTGTCTGGGCTTCGCAGGGTgccctctctcccaccaccttCCTCCCCTGCCCTCACCGCCACCCCCACTCACAGACTCACTCAGCAGTCCCCTGGAGCCtcactcctcctcacctcctcttcctcctcctttcccaCGGCTCCTCCACAAGTCAGACCCTTTGTCCCTCTGGGGTCTCCCGCGGGTCAGCGCAGGGGCAAAGCTGCAAAGACCTGGGGGACTGAGATAGGAGCCTTCTGATCCAGAACCTGTCAACACGATGCACTGTGTAAAGTTTGCTCTTAaccacagatctgggatcagattACCCAACCATTAACCCAGTGGAGGCTgcagaggggaggacggctcataataatatctggaacggagcaaatggaacggtatcaaacacatggaaaccatctctctgtctctgtctctctctctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2620285 lncRNA upstream 37487 5470463 ~ 5471514 (+) False G2291218
TU2620288 lncRNA upstream 37805 5470463 ~ 5471196 (+) True G2291218
TU2620287 lncRNA upstream 37863 5470463 ~ 5471138 (+) False G2291218
TU2620277 lncRNA upstream 42697 5452653 ~ 5466304 (+) True G2291213
TU2620281 lncRNA upstream 46700 5461741 ~ 5462301 (+) True G2291215
TU2620267 lncRNA downstream 10288 5535357 ~ 5535923 (+) False G2291206
TU2620266 lncRNA downstream 10342 5535411 ~ 5535923 (+) True G2291206
TU2620321 lncRNA downstream 13714 5538783 ~ 5544500 (+) True G2291247
TU2620333 lncRNA downstream 20911 5545980 ~ 5546898 (+) True G2291250
TU2620335 lncRNA downstream 26108 5551177 ~ 5551427 (+) True G2291252
XM_036970898.1 mRNA upstream 96376 5295809 ~ 5412625 (+) False dlgap3
XM_036971384.1 mRNA upstream 491053 5014549 ~ 5017948 (+) False smim12
XM_021559746.2 mRNA upstream 497197 5002978 ~ 5011804 (+) True pef1
XM_036971823.1 mRNA upstream 2327201 3160218 ~ 3181800 (+) True LOC118946537
XM_036971624.1 mRNA upstream 2516913 2930144 ~ 2992088 (+) True angpt2b
XM_036971451.1 mRNA downstream 67043 5592112 ~ 5615373 (+) True LOC110489357
XM_021562074.2 mRNA downstream 107228 5632297 ~ 5641547 (+) True slc6a18
XM_036971729.1 mRNA downstream 120114 5645183 ~ 5677904 (+) True LOC110489437
XM_036971730.1 mRNA downstream 199201 5724270 ~ 5749736 (+) False wipf3
XM_036971826.1 mRNA downstream 294011 5819080 ~ 5856740 (+) True LOC110489352
TU2620290 other upstream 36848 5471563 ~ 5472153 (+) True G2291219
TU2620241 other upstream 90763 5416832 ~ 5418238 (+) False G2291194
TU2620244 other upstream 90763 5416832 ~ 5418238 (+) True G2291194
TU2620246 other upstream 101493 5401428 ~ 5407508 (+) True dlgap3
TU2620245 other upstream 107739 5384651 ~ 5401262 (+) False dlgap3
TU2620425 other downstream 199255 5724324 ~ 5738945 (+) False wipf3
TU2620421 other downstream 199317 5724386 ~ 5738945 (+) False wipf3
TU2620437 other downstream 214353 5739422 ~ 5749458 (+) True wipf3
TU2620681 other downstream 622755 6147824 ~ 6148246 (+) True G2291490
TU2620690 other downstream 636009 6161078 ~ 6161719 (+) True G2291498

Expression Profile