RNA id: XM_036971730.1


Basic Information

Item Value
RNA id XM_036971730.1
length 2985
RNA type mRNA
GC content 0.56
exon number 8
gene id wipf3
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 5724270 ~ 5749736 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGAAGCGACAAGGTGTGCCCCCTTGGTGTCCCAACTTGTCAACACGGCGTGGTAAGAGATATTACGCACAAACAACCGTAGGCTAGAGAAGAGGAGAAGTCATttaacttcagaacaaacttttTTGTTGTGTTCACTAGCATACATTTAATGAGACATTTGGCTGTGTTGAATCTGTCGTTACACTCACCATTACCAGTTGAAACTTGGTGGAACTTCAAATGAACCGTTTTTATTTTTCTGGAATAGCCAACGACCAACGCCGGACTACAAACCTATCACAACATTGTTGCTGTCCCCAGGGTTGTGCTTTCCAGCTGTAGCGGACTATAGCGGTGCGCTCGTTATACGGCTTGAATCCGACGTCTGTAACTGTAGCCAATGACTGTAGTCTTTCTCCCCAATAATACTATAGTATTTGCCGGGTCAGTACCCGTGGTCAGTATCTGTCGGGTCTGTATCTGCCGGGTCAGTATCTGCCGGGTCAGTACCTGCCGAGTCAGTACCCGCGGTCAGTATCTGCCGGGTCAGTATCTACCGGGTCAGCGGCACACGCTCTGCGGGCAGAGTGCTGACGGACTTGTCGCGCCACGAACGAAATCCTCCCGGTAATACATAGGCTAGGAGTCCAGAGATTCTGTGGTCAGCCATGCctgtcccccctcctccccctccccctgcaccccctccacctccaccaccttgTACTGCTCACCCACcacagtcTCGGCCAGACCCTCCTAGTCTCCAGAGtgttggaggaagaggagggaggaacgCCCTGTTAGTAGACATTCAGAAAGGAGCCAGGTTAAAGAAGGTTTTACAGGTCCATGACCGTAGCGCACCAGTTGTCGacaAGCCCAGGGCCAGTGGTGGTCTGTCCCAGGACCATCCCCAGGGAGGATCAGGAGGAGGGGCGGAGGCTGTGAGGCCCTCTCTAGGGGGCTTGTTCTCTGGCGGGTTCCCCATCCTCAGACCCGCTGGGCAGAGAGCCTTCACAGGGAAGAACGTGGtttcaCGCTCTAGCTCATCAACGGGACTGAAGCCTCAGTGGAACCCTCCACCGACATCGTCAGACAGTGGCCACACCCCCGAGCCCTACCATAGGCCGACAGAGAGAGGAAGCCCTTCCCACCGCCCTGCCCACTCAGCCTCcgcacctccctccccctctcacagCAAACCTCCCCTCTCCATCACTgcccccaccaccactcctcctccccctcctccctcattcCATGAGCGTCCCAGCAGCAGGCCTCCCCCCATCCCTACcggtcctccccctcctccccctacccAAGTCACCAAGCCTACCTGGCTCCCCATCCAGCACCCTCACCCCTTACCCCagccctctacccctcctccctccacgtccccctcctccctccctaaccGGAACTCTGGTTTCTTCTACCCgcctcctccctcccccatcctccccccctccctcccccctcctccctcccctgtcctctcatccttcccccctcctccctcccccgtcgtctcctccctccccccatctccctcccccatcctctcctcctcccttccccctcctccctcccctgtcctctccccttcctctgaaTTGAGGTTCTCTATCTCTGGTCCCCAcggcccccctcctcctcctcctcctccacccctccccgcCTCATTCACCCCCAGCTGCccctcctctctgccccctccacCACCCAAGATGCCCCCTGTGCCGTCCCCTGCCATGCGGCCCCCGGTGCCCCCCTCCTACCCCTGCACTGCACCTAGTCGACGACCACCAGCTGTGCCCAGGAGTGCAGGTGTGGGGAGGTCGTTGGCTTCTCCCCCCGTCCCACCGGCCCGCTCCCCGTCCACGGAGCTGACCAACCGGAtccctccccctcatcctcctccccttcccccgtCCTTAATGAGGAATGGACACAGTCTAAGCTTGCACAGCCTGGATGACTTTGAGTCTAAATTTCAGTTCCACCCAATAGAAGACTTTCCCCCTCCAGAGGAGTTTTGGCCATTTCCACGCATCTACCCAAGCAGAGAGAACCAAGGAGTGATCAGGACACAGCTATGGTGATGCAGTGAGACAACAtggacccccccacccccacacacacacatccaacagCTGGCCCAACACATCCTCTTCATCCTACATtatcctcttcctctgtccccaGGGGCCATGCTCATGGAcggataatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatcttgtGGCGAATGCAATACCGTGCCACACCCAGTGCAGGCTACCGACCTCCAACCTTCTCCAGTGTGGAATGTTTTGAATGTGTCAGGAGGGTAGAACCCAACagtgttctctccctctcactatatatatatctattgataaactgggtgGCACCAGCcccgaatgctgattggctgacagccatgatatatcatgggtatgacaaaacatttattttacgttgataaacagtttataatagcagtaaggcacctctgggatttgtggtatatgaccaatataccacggctaagggctgtatccagtcaCTCCGCGTTGTGTTGTGCCAaagaacagctcttagccgtggtatattggccatataccacacctcctcgggccttaaatatatactgtatatatatgtctctctctgtctctctctgttctctctctctctctctctctctctctctctctatatatatatatatatatatattgagattcttcaaagtagccaccctttgccttgatgacagatttgcacgcTCTTGGATTTCCCTCAACcaccttcacctggaatgcttttccaacagtcttgaaggagttcccacctaTGCTGAGcgcttattggctgcttttccttcactctgtggtccaactcgtcccaaaccatctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2620419 lncRNA upstream 4231 5719807 ~ 5720039 (+) True G2291321
TU2620410 lncRNA upstream 23653 5700013 ~ 5700617 (+) True G2291313
TU2620405 lncRNA upstream 24596 5699189 ~ 5699674 (+) False G2291312
TU2620404 lncRNA upstream 24596 5699248 ~ 5699674 (+) False G2291312
TU2620406 lncRNA upstream 24715 5698936 ~ 5699555 (+) False G2291312
TU2620455 lncRNA downstream 24114 5773850 ~ 5779668 (+) True G2291338
TU2620458 lncRNA downstream 34429 5784165 ~ 5784756 (+) True G2291341
TU2620513 lncRNA downstream 117866 5867602 ~ 5872088 (+) False G2291359
TU2620518 lncRNA downstream 117866 5867602 ~ 5871875 (+) False G2291359
TU2620508 lncRNA downstream 120286 5870022 ~ 5872088 (+) False G2291359
XM_036971729.1 mRNA upstream 46366 5645183 ~ 5677904 (+) True LOC110489437
XM_021562074.2 mRNA upstream 82723 5632297 ~ 5641547 (+) True slc6a18
XM_036971451.1 mRNA upstream 108897 5592112 ~ 5615373 (+) True LOC110489357
XM_036971692.1 mRNA upstream 199201 5509001 ~ 5525069 (+) False LOC110513117
XM_036971693.1 mRNA upstream 199201 5509001 ~ 5525069 (+) True LOC110513117
XM_036971826.1 mRNA downstream 69344 5819080 ~ 5856740 (+) True LOC110489352
XR_005041384.1 mRNA downstream 296854 6046590 ~ 6047475 (+) True LOC110520219
XM_036971319.1 mRNA downstream 360643 6110379 ~ 6203899 (+) False LOC110487836
XM_036971321.1 mRNA downstream 390936 6140672 ~ 6203899 (+) False LOC110487836
XM_036971322.1 mRNA downstream 436825 6186561 ~ 6203899 (+) False LOC110487836
TU2620290 other upstream 252117 5471563 ~ 5472153 (+) True G2291219
TU2620241 other upstream 306032 5416832 ~ 5418238 (+) False G2291194
TU2620244 other upstream 306032 5416832 ~ 5418238 (+) True G2291194
TU2620246 other upstream 316762 5401428 ~ 5407508 (+) True dlgap3
TU2620245 other upstream 323008 5384651 ~ 5401262 (+) False dlgap3
TU2620681 other downstream 398088 6147824 ~ 6148246 (+) True G2291490
TU2620690 other downstream 411342 6161078 ~ 6161719 (+) True G2291498
TU2620737 other downstream 558400 6308136 ~ 6316697 (+) True G2291541
TU2621799 other downstream 1132641 6882377 ~ 6883166 (+) True G2292347
TU2622167 other downstream 1440516 7190252 ~ 7190850 (+) True G2292666

Expression Profile