RNA id: XM_036971826.1


Basic Information

Item Value
RNA id XM_036971826.1
length 2911
RNA type mRNA
GC content 0.52
exon number 10
gene id LOC110489352
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 5819080 ~ 5856740 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCAAATTTGTTGGGATATTTTACTTCCAAACAGACATTTTTCGACAAAAAGAATACGAGTGCAAATAGGTTACAACCTGTCTTGCCAGCCCCAATACTCATACATTGCTGcaagctaactggctactagTAGCTTCGACTTGAGGGATTGTTCCTTAACGTGCGTGAAAAACAAATCGCTTCCTTCTTTTGAAGAGGATAAAGAGGACCTGCGCTGCATAGCTTGTTCTGAATGTCATTTTCCTGGGGTCTGGATTTTATTCTACCAACGGAGTTTTATCTAAATCAGGCTATTCCATCTACTAGTATCTTGATATTAGGACGACAGCGACGGGTGTCGGAAAGGTGTTATCGAGGCAGcacagaggcagagagtgaggaTGCTGACTGGTAAATTGGTGAAAGACATAGACAGATATCAAGCTGTCCTTACCTCGCTACTATCACTCGAGGAGAACAAATTCTGCGCGGATTGTGAATCAAAAGgtccCAGATGGGCGTCATGGAACCTGGGTATATTCATCTGTATCCGCTGTGCTGGGATCCACAGGAACCTGGGCGTCCACATCTCCAGGGTCAAGTCTGTCAACCTGGACCAATGGACACAGGAACAGatacagtgtgTTCAGGAGATGGGGAATGCCAAGGCCAGACGACTTTATGAAGCTTTCCTACCAGAGTGCTTCATACGACCAGAGACTGACCAGTCAGCAGAGATGTTCATCAGGGACAAATATGAGAAGAAGAAGTACATGGACAAGATCCTAGATGTCAACAGGCTtagaAAAGAGAAGACCTGTGAAAACATCCCCATGGAGCCAGTAGTGTTTGAGAAGATGAAGTTGAAGAGAGAAAACAGCCCAAAGACACAGACCCAGTCTCCATCTATCTCAGACCTCCTAGGACTTGacGCTCCTGCTCCTCATGCTGTTGTATCTAATGGTAGATCCAGCCCTGGAGAGAGGGGGTGTCCTGCGGCGGCTAACCCAGCTACGATGCATTCTGACCTGAATCTATTCAGCCCCCTGCctgcctcctccaccacctccaccaagaCCACAgtgagattcagagagagggacCAGTTATACACAGACAGattgacaaacaaacagacagacacaccgGTGGGTAGCTCCATGCCCAGGGGTTGTGTGGCTGCATCGGTACCCGAGAACCTCAGCCTGTTCCTGGACTCAGCACCCAGACAGGAGGGCTCTAGGACAAAGATGTCTAAGgactccatcctctccctctacgGAACCACACCCACATGGCACCAGAACCTGGCTGCACGAGCTGGCCTGTACATGAACCCAGCCCAGCTGGGCTACTACGGATCATACCATTCCCTGGCCACGCAGGGGGGAGCGATGGGAGGAGGCATGATCACATCACACTCCATGATGGCCCTGAGTGGTCAGCAGCAGAACGGTGTGATGGGAGGACCGCAGAACGGAATGGTACTAGCACAGCAGAATGGAATGGTACTAGCACAGCAGAATGGAATGGTACCAGCACAGCAGAATGGAATGGTACTAGCACAGCAGAATGGAATGGTACCAGCACAGCAGAATGGAATGGTACCAGCACAGCAGAATGGAATGGTACCAGCACAGCAGAATGGAATGGTACCAGCACAGCAGAATGGAATGGTACCAGCACAGCAGAATGGAATGGTACCAGCACAGCAGAATGGAATGGTACTAGCACAGCAGAATGGAATGGTACTAGCACAGCAGAATGGAATGGTACTAGCACAGCAGAATGGCTTTATGGCTCAACAGGGTGTCATGGGGCAAGCGGTCAACACATCCCCGTTCCTGGTAGGAGTGCCCCACAACATGATTGCTCAGCAGCAAAGCATCATGGGAGCTCAGCATAAAGGTATGATGGGAGCTCAGCAGAACGGCATGATGGGAGCTCAGCAGAACGGCATGATGGGAGCTCAGCAGAACGGCATGATGGGAGCTCAGCAGAACGGCATGATGGGAGCACCGCAGAACGGCATGATGGGAGCTCAGCAGAACGGCATGATGGGAGCTCAGCAGAACGGCATGATGGGAGCACCGCAGAACGGCATGATGGGAGCTCCGCAGAACGGCATGATGGGAGTTCCGCAGAACGGCATGATGGAAGTTCCGCAGAACGGCATGATGGGAGCTCAGCAGAACGATATGATGGGAGCTCAGCAGATCGGCATGATGGGAGCTCAGCAGAACGATACGATGGGAGCTCCGCAGAACGGCATGATGGAGGCTCAGCAGAACGGCATTATGGGAGCACAGCAGAACGGCATGATGGGAGCTCAGCAGAACGGCATGATGGGAGCTCAGCAGAACGGCATGATGGGAGCTCCGCAGAACGGCATGATGGGAGCTCAGCAGAGCGGCATGATGGGAATTCCGCAGAACGGCATGATGGGAGCTCCGCAGAACGGCATGATGGGAGCTCAGCAGAGCGGCATGATGGGGGCTCAGCAGAACGGCATGACGGGAGCTCAGCAGAACGGCATGATGGGGGCTCAGCAGAACGGCATGACGGGAGCTCAGCAGAACGGCATGATGGGGGCTCAGCAGAACGGTATTAAGGGGGGAGTGGCGGCCGTGCCTCAGCAGGTGTACGGAGTACAGCAGTGTCAGCAGCAACAGTGGAACATCActcagATGACCCAGCACATGGCGGGAGTGAACTTCTATGGAGCCAACGGCATGATGGGATACGGCGGTCAGCACATGGAAGGACCAACGACTCAAAGCTCCACCcacatgatgacatcacacatCTGGAAGTGATGTCATTATCTGAAGAGGAAGTGAAGTTGATGTCACTAGAGCAGCAGTGGTTCTTGGGAGGTTTCGATCTGGCCTCATGTACAGGCCAGCTTTTCTATTAAACTCTCCATCAGACA

Function

GO: NA

KEGG:

id description
K12486 SMAP; stromal membrane-associated protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2620458 lncRNA upstream 34324 5784165 ~ 5784756 (+) True G2291341
TU2620455 lncRNA upstream 39412 5773850 ~ 5779668 (+) True G2291338
TU2620419 lncRNA upstream 99041 5719807 ~ 5720039 (+) True G2291321
TU2620410 lncRNA upstream 118463 5700013 ~ 5700617 (+) True G2291313
TU2620405 lncRNA upstream 119406 5699189 ~ 5699674 (+) False G2291312
TU2620513 lncRNA downstream 10862 5867602 ~ 5872088 (+) False G2291359
TU2620518 lncRNA downstream 10862 5867602 ~ 5871875 (+) False G2291359
TU2620508 lncRNA downstream 13282 5870022 ~ 5872088 (+) False G2291359
TU2620512 lncRNA downstream 13282 5870022 ~ 5872088 (+) False G2291359
TU2620516 lncRNA downstream 13282 5870022 ~ 5871875 (+) False G2291359
XM_036971730.1 mRNA upstream 69344 5724270 ~ 5749736 (+) False wipf3
XM_036971729.1 mRNA upstream 141176 5645183 ~ 5677904 (+) True LOC110489437
XM_021562074.2 mRNA upstream 177533 5632297 ~ 5641547 (+) True slc6a18
XM_036971451.1 mRNA upstream 203707 5592112 ~ 5615373 (+) True LOC110489357
XM_036971692.1 mRNA upstream 294011 5509001 ~ 5525069 (+) False LOC110513117
XR_005041384.1 mRNA downstream 189850 6046590 ~ 6047475 (+) True LOC110520219
XM_036971319.1 mRNA downstream 253639 6110379 ~ 6203899 (+) False LOC110487836
XM_036971321.1 mRNA downstream 283932 6140672 ~ 6203899 (+) False LOC110487836
XM_036971322.1 mRNA downstream 329821 6186561 ~ 6203899 (+) False LOC110487836
XR_005041352.1 mRNA downstream 537575 6394315 ~ 6398079 (+) False LOC118946494
TU2620437 other upstream 69622 5739422 ~ 5749458 (+) True wipf3
TU2620425 other upstream 80135 5724324 ~ 5738945 (+) False wipf3
TU2620421 other upstream 80135 5724386 ~ 5738945 (+) False wipf3
TU2620290 other upstream 346927 5471563 ~ 5472153 (+) True G2291219
TU2620241 other upstream 400842 5416832 ~ 5418238 (+) False G2291194
TU2620681 other downstream 291084 6147824 ~ 6148246 (+) True G2291490
TU2620690 other downstream 304338 6161078 ~ 6161719 (+) True G2291498
TU2620737 other downstream 451396 6308136 ~ 6316697 (+) True G2291541
TU2621799 other downstream 1025637 6882377 ~ 6883166 (+) True G2292347
TU2622167 other downstream 1333512 7190252 ~ 7190850 (+) True G2292666

Expression Profile