RNA id: XM_036971321.1


Basic Information

Item Value
RNA id XM_036971321.1
length 6966
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC110487836
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 6110379 ~ 6203899 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtagctGGAGCTGTGTCAGTGTGTCGGTGTGTAGCTGGAGCTGTGTCAGTGTGTCGGTGTGTAGCTGGAGCTGTGggaatgtgtgtttgtttactaGGGTGACGTGGAGTGTGAGTGTATGAGTGAGTCTCTAGCCAGATTTAGAGCAACACAAATGTGTATTTAGCGAAAACAGGGAAGGCATGACAGAGCATGAGATTGAGTGTATGAGTGAGTTTTTCCAGTAGTGTGTGTATGCTAAActgtttgtgactgtgtgtgagttTCAGGATTAGGGGGGTGTGAGTTTCAGGACCAGGGGGGTGTGAGTTTCAGGACCAGGGGGGTGTGAGCTTTTGAAGAGAGACTATCCAGATGTTGCCTTTTGGGACACCTCCTTCACCTGGACTCTAGACCCCATGTAGGGGGGGTGAGGATTACCCCGGATTCCTTCACCATGGGGAACAGCGTCCACAAGAACAAGAAGAGGGTCCCTGAAGCCCGCAACGGACCCTCTTCACACCTCAACCCTGACCTCCGCTCAGGCTCTAAACCTGGCCCTAACCCCAGCCCCCGCTCAGGGAATACCAAATCCTTCTGGCACTTTGGGAGGGTGGATAAACTCAAAACAGctgGTCCTAAGTGTCTGGATGAACAGAAGAAGTTGACAGTTCACTACACAGCCTCCTCACACTACCAGGAGAATGTGTTCATCGAGGGCAACCGCCCTCAGTACCTGGAAGACCTGCACACTGAGGCACGGGAAGGGTTAAAGATACTACAACAAGAAGAACACAACAAAGGAGTGGACTTTCAGGAGGACCATAGTGACGCAGATGTCAGCCCCAACCACAGGGATGGATCTCAGGAGTCAGGAAGTACCGCCGGGAATTCTGTTACTGCAGTGACCTCTGCTGGATTGGCTGTGTCCACGAGACCTGTGCTCACACGCcaagGCTCCACATTCAAGCCTCTGAACCCAGTGAAGAGACAGGACAAGAGGAAGAACAGGAGGACTACTATCATGGGCATACCCCAGCAGGTCCAGAGAGAGCTGGCCCTTCACAGTGGCTCTGAGTACAAAGTTCATTCCCAGCTCCCTAACGGCTCTGTCGGACAGGGTAGTGACGGCCAATCAGGTGCGGTCGTCATCCCCACCATCGACGGAGAGAACCCTCTAGCCAACTACGAAGGGGCAAGAGTACACCTCTCAGACCTGGAGGCATCCAGAGAGGAGCAGCTGTTGAGACACCATCTCCAGTCTGTTTACAGGGACGACCAGGGCTTCAGCCACCACAGGGGACTGGACTCtcgtctctcctccacccagagGCCCAAGTCTCTGGCCGTGCCGGGCACGACCTCCTCGTGCTCCTCTGGATTCCCCAGCTTCCTCCAGGAGCCACAGGGTCCGGTGATGTCCATCTCTCCCCAAGCCACTTACATGTCTAAGATCATCCCGAACGCCTACCTGCCGGCCTCCGTTGACGTCATACAGATTGACCGCAGCACCAGTCGTACCCGTGGAAACAGCGGTAACGACACGGCCCGTACCATCAGCAAGAGCTGCCTGGCGTCCGGGTCGTCGGACAGCCCTGCGTCGTCGAGGAGGTCGGGCGGTGAAGGTTGCTATGAAGGCGGTGACAGCGTTTCACATGGTGACAGTAGTTCCCGTGACAATGGCTCTAAGGTGACCCCACACTTTGTGACTTCAAGATCCAGCTGGAGCCACTCGCAGTCTTCCGAGACGATCAAGTCCAACTCCTCCGCCATCTCCTCCACAAAGGGGAGCTTCGGACTTGCTAACCCACAGACGGTGAGCCTAGTTGGGCAGGAGACACAGCCGCAGCAGCCTGGTGCTGGGGACCAGGACAAGGTGAGCCTACAAAGCTCTAGTGCTCTCAGCAGCACTAGTAGAGGTACTGGTACTGCGACCGCTCAGGGGGTCCTATCTGGATCTGGGGGGATGAGCGATTTTGGAGGAGACTCTTTCAGattctctcgctgtctgtcgatCATGAAGTCCAAGTTGCCCCCGGCTCCCCCCAGGAGAACCAACTCACTGCACCATGAGAAGATGATAAAGAGGCGACTGGTGGAGATTAAAGACCTCAGTGACTCTGCGGGTGGGAAGTTGGAGGCTGCTGAGGACACAAGCTTGGTTACGATCGAGATCTCTAAAGAGCTCTACAAAGAAATCACAAAGTGCTCTGTCCCTGTATCCAAATCATCTGGGTTTAACTCTTTAGATGATACAAGATCTTCCACAGCATCTAGTCCTCTGAGTCCCACACAGGCCTCCCATGGAGGTAGTGGAAAATCAGAGGGGCCAGTGTCCAGCAACTCTTCCCCCCAGAAAGCCCCATCAGAGGAGGGTACATTTGAAAGGACCATGTCCCCCTCCAGTGGGTACTCCAGCCAGAGTGGTACACCGACACTTTCCCCCAAGGGAATCCTCCCTTCCGTCTCCCCAGGTAAACAGAAGAAGTATCCTGTCAAACCGGAACGATCTGGTTCAAGAGCTTCCTTCTCTGCAGCCTCAGTCTCCTCTTCCCTCACCTCCCTGTCTTCAGTCACCTCAGAACTCGTCAATCGAGAGGCCTCGAAAAACAGCTTTAGCCCTCTTCAGCAGGCATCCCTACCCCCGGCTGTTATGAGAATAGAAGATCCAGAAATTGGGACCCCAGTCCATTTCTCTTCATCCATGGTCATCAGTGAGCTGCTTAACATTCCGCCACCCCCCAAAATCAAAGCCCCTTCCCCGCCACCCCCGGAGACCTGGGCCCACAACAGACACACCTTCGAACTGCTGTGTGGGCCTTGCCCCAACATCAACAGGCTAGCACAGCTCCAGGAGCAACAGGAACTAAAAGAGCAAGCTGCCATGATTGAGCAAAAGCAGGAATCTCAAACTAAAGCTAGCAAGGAGTCTGAAGGCTCAAACAAAAAGCAGGCTACGGTAGAAGAAGTTACTTTGACAAAATCAGAAAGCAAATACATTATTCCCCGAGACAAGACTGAGCCTATGTTAGAGCAGGCACCTGAGGTATCCGAGAGCACAGAAAGTCAAACGAAAGATCAAGGAAGCCTGGCGGTGATCGCAGAGAAGGTAAAAGCAAGTGTAGAGATCCAGGaccagaagcaggaacagagtagtagtagcagtagtagtgttgcACAGGTCAAGGATCAAGAAGAGAGGCTAGAGACACAAGTTAGTTTAACAATGATTCCAAAGAAGGAACCCCCTCCTGTCATGAAGAAAAGTACTCCTAGAAAAGAAGCTAAAGTTCAATTAACAGCAGATATTCAACAAAAGTCGCCATTTGATGAGGTCACAGTAGAGGTGAAGGTAGAGTCACCCAGCAAGAGTGAGAAGTGTTCTCCACGGGATGAGGTAGTCGCTAAGGAAGTTGAGGTAGTCACTAAGAAAGTTGAGGTTGAGGTAGCAGCTAAGGAGGTTGAAGGTCGGAGTGCTACTGAAAACACTAAAGAGGAAAGTCCCACCAAATCTACACAGACCCTTGCCGTGGAGCCTCCCAAAGTGGACCGGGTCTCCCCTCcagcctcccctcccccttcccaccaccctcctccacctccttctaaGACACCTCCCTACTCTGTGGCCACTCCCCCACCTGAGTTAGAGGAGGAGTGTGAGGAAGAGATTCCCATAGTACAGTCCTGCTggccccctccacccccaccagagGAGCCAGCAGATTCAGTCTTTGATGAGCCAGATGAGATGGActttccacctcctccccctcccttcatGACAGAGAGCTTGCCAGATGTGGTGGAGACATGTAACACAGTCGCTGATAACCAGGAGGCGTCCATTATAGCTCTGAATGGGGAGGAGGTTAAGGAAACCGTGAATGGTTTCACTGTAGCAACTGTGAATGGGGAAAATACAGATCTTTCACCCATTTCCACTCAAATGGAGCCAAAAGAGGATAAACCTGAAAAGGGGATTCTGAACTCTATTTCTCTAATCCCAACTGATGAAACCAGCTTTGAGGAATCTGAATCAGCTGAGCTCCAATTAATTCCTTCAGATGATTCAGCTGTCGTTTCTCCAGTTCAGCCCAATGAAAAAGAGGCAGAGGTCAAGCAATCGGCCCAGAAACCAATCACAATGCAAGACACCCCACAACCAACAGAAACTTCTCCTGAGTCACAGGAAGTCCCGCCCTTACCAGAGGATGTCCCTCCCCCACACCAGgaagctcctcctcctcctcctccaccaatgACAACAGCCTTGGTGCCCCCATCaagtattcctcctccacctcctatcaatgtccccctccctccccgtGTACAATTTGAGGATCAGATGCCCTCTGAGCTCCTTAACAGTGGCCCACGTCCACCACCCATTAAcatccctctcccaccccctctcccaaCTGAGAACCAACCCCCTGTGATCTTCAGGAGACAGCCCAGCTTGGCGAACAGAGAGACCAGGAGCAAAGAGCTTCTGTCTAGGCACAAGAGTGTCCCTATTCCCAAAGAAGATGCCAACATTCCACTGGTCACACCCTCTCTGCTTCAAATGGTACGTCTCAGATCGGTCAACGTTGGCGAAGACTACGTTAAAACGCTTGCTGACGACAACAATTCCAACAGTGGGAAGCCACCTGCACAGAATCAGAGTTCAACCCAAATCCAAACCCAAGGATCTCAGAACATAACACCCCAAAAACCAATTCGGAGATCCCTGTCACTAAAATCCACACCTCCGCCACTGAAGTCGTCCCCGGTGACGCTCATCGCCCCCTCGATGAGTATGCAGGAAGCTATCCGAATGAAGACAGCAGCCATGTCTTCCAGAGATAATCTTCCAACACGCTTTAGAATGCCATCCTCCACCTCAATTCCCAGTTGCAGTGGGGGTAAATCAGGAATGTTATCCCCAGTGTTACCAGAAGGGGGTGAGATGCTAaagacccccaccaccaccactgctaGCTTCATCTTCTCCAGGAGCTCAAAGAAGGTTGTCATAGAAACGCCTGCCTCCTCTTCCCCCGAGGTACAGGCGAGCCTAAAGCAGAGCCTAGCCGCGGAACTCAAGCGCTTTTCCGAACAATCTATGGCTTCCACAGTCGCTAATGGCAACGTTGGAAGAACTGGGATTCCGAGGAGAATTCCGCCACCCGTGGCTAAGAAACCAGCTCACACCTTGGAGAAGCCTGTGTGTTCTACACTGAGAAGCACTCCGTCTCCAAGGGGAACAGAAGCTaacggagagacagaaacagcGCAACCTGCGGGCCAGCAAGCACTGACAGAGGACAGCAAGTGAAATGGAGACGTCTAACATTGTGGAAGCACCATTGCGCTTTTTGAAAAAGACTGGATTCTTGTGGAATGGGACTAAGACGGACGAACAAATCAAGGACTGCAAGAACCTGAGAAacatgggggggagagagagagagagagagggagagagaataatgagagtagagagagagagtcaactcAGAGTTAAAATGTCTTCAAAAGGCCTTtatatttttgcaaaaaaagATGGCCCCCATTTCTTTTCAAATTATAGCTTTATTTTGGGAGTATTTTTCTAAAACATAGAGGTCCAGTGAGGCTCCATTCAATCCGTATCGTGGAAGTtcagcgtgattgaaatttaaagacaATGTTCCAGCGTTTAGAGGAGACTCCCTTCACCGTAAACGCTTTATGGCGGCTCAGTCGGAAAAATACCTTTAAGAGAGCTTCAGCGCCACAGATAGAATAGAGAGCCCTTAGTCTGCTCTAGGACAGTGCAACCATCAGGACAAAGGACAAACTGCGGCTGGATTTTGTAAATACAGCACAAAAGGCTGTGCTTGTCGTAGAGGTCATCCAGAGGTCATCCAGAGGTTAAAAAAGGTAGCAGTCACTGCAGTTGAGAAAGAAAAAACAAGACGACAATAAAAATAAATCTTCATAAAGATTCCCTTTTGGAGTCAAACAATCAATGTATTATtttaattaatgaattaatgaTCTTATTTCCTAATGGAATGACAGATTATGTAATTCCCAGAATTTATCTTTTGATCTCGTCGATCAATCAATTCATTTGTggtgtcaatcaatcaattaacacCACATTTTACTGCGCCTATCCGGGGTGTTTGTCAATCAATGTGTTATTTTAGTTTTTTGACCAATGACACCACAAATTATTTAGGCTTAGGTAGGGTAGCGcatgagaaaaaaagagaagctgcatattttaaaaaaaaataccatTTATATATTAGACCTATTgtcaaatttatttaaaaaataaaataaaataaaaaaaatcactttGTAAGATAATTAAGCTTTTAAAGTTTAGGCAAGAAAACATTTTATCCTTCTGAAAACTAACGTTCAACGAAATGAGCTGCTTCCCAATTCTAGATCTCTTGGcctgcatcccaaacggcacatGTATTCCCCCACACAGTACTAGTGTGGTGGCAGCAGATAGCCTTGTGGTCGGAGCGTTTGGCCAGGAACTGAAAgtttgctggtttgaatacctgagccgacaagttgaataattgtttttgttttttgcacCAGGGgtactgtactactatggctgaccgtGTAAAACACCACGTTTTACTGCACCTATCCGATGTGTGTCAATAAAACTATAATTTTTTTGGGAAAGTTTAAATGTTGTAAACCAGAGAATATAGTGTATTTTTGGGACACAACCCAAGCAGATAGGCACAATATGGCTATTCCTTATAGTTACTTACACTAAACACCATTCCCATGTGTTCAAAATACAATTTTGATGGCTTTTCTGTTACTTAACCATTTCCTGTTATATTAATGTGTCTTTAAGTTGCTTTAAAACAACGTTCTTTATTAGTCCTGCGTCAGCATTATTAACATCGTCTGTCATTTCATGACCAATTATTAAACCTTTGGTTTGAGTTCAACTGATTCATCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2620669 lncRNA upstream 16136 6124143 ~ 6124536 (+) True G2291480
TU2620634 lncRNA upstream 94794 6044214 ~ 6045878 (+) True G2291452
TU2620630 lncRNA upstream 100098 6036648 ~ 6040574 (+) True G2291449
TU2620607 lncRNA upstream 143296 5991397 ~ 5997376 (+) True G2291430
TU2620604 lncRNA upstream 151903 5987148 ~ 5988769 (+) True G2291428
TU2620710 lncRNA downstream 22627 6226526 ~ 6227781 (+) True G2291518
TU2620713 lncRNA downstream 26994 6230893 ~ 6237214 (+) True G2291521
TU2620774 lncRNA downstream 114139 6318038 ~ 6375512 (+) True G2291576
TU2620783 lncRNA downstream 123657 6327556 ~ 6328332 (+) True G2291584
TU2620789 lncRNA downstream 144440 6348339 ~ 6348676 (+) True G2291590
XR_005041384.1 mRNA upstream 93197 6046590 ~ 6047475 (+) True LOC110520219
XM_036971826.1 mRNA upstream 283932 5819080 ~ 5856740 (+) True LOC110489352
XM_036971730.1 mRNA upstream 390936 5724270 ~ 5749736 (+) False wipf3
XM_036971729.1 mRNA upstream 462768 5645183 ~ 5677904 (+) True LOC110489437
XM_021562074.2 mRNA upstream 499125 5632297 ~ 5641547 (+) True slc6a18
XR_005041352.1 mRNA downstream 190416 6394315 ~ 6398079 (+) False LOC118946494
XM_036971685.1 mRNA downstream 447565 6651464 ~ 6676974 (+) True LOC110487847
XM_036970956.1 mRNA downstream 599134 6803033 ~ 6867523 (+) True LOC110489360
XM_036971606.1 mRNA downstream 713090 6916989 ~ 6942356 (+) False LOC110487851
XM_036971605.1 mRNA downstream 713091 6916990 ~ 6942356 (+) False LOC110487851
TU2620437 other upstream 391214 5739422 ~ 5749458 (+) True wipf3
TU2620425 other upstream 401727 5724324 ~ 5738945 (+) False wipf3
TU2620421 other upstream 401727 5724386 ~ 5738945 (+) False wipf3
TU2620290 other upstream 668519 5471563 ~ 5472153 (+) True G2291219
TU2620244 other upstream 722434 5416832 ~ 5418238 (+) True G2291194
TU2620737 other downstream 104237 6308136 ~ 6316697 (+) True G2291541
TU2621799 other downstream 678478 6882377 ~ 6883166 (+) True G2292347
TU2622167 other downstream 986353 7190252 ~ 7190850 (+) True G2292666
TU2622774 other downstream 1642780 7846679 ~ 7847462 (+) True G2293172
TU2622846 other downstream 1710725 7914624 ~ 7917597 (+) False e2f3

Expression Profile