RNA id: XM_036970885.1


Basic Information

Item Value
RNA id XM_036970885.1
length 2683
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC110487852
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 7016230 ~ 7044759 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCATCCGTCTCCATTTTCAACAGGCAAAGCGCCGCGACAGGAGCACCCAGCCGCCCTCGTCAGCAGCCGTGCGGTAACAGCGAGAGCAATACATGCGAAGCAGCGAAATTAATCTGCACGAATAAGTGGATATTTACGCACTGATTACATCATTTTACTGGACTATTTATtctactgttgttgtttatgttttctATCCACCCGAAGTTTGTTTTTAATTGCACAATTCGCATTTCTAACTGATTTCCAACTCAAAATGGAGAATCAAGAAGGCAAATACCTCCCGGAGCTCCTCGCGGAGAAAGACAGTCTGGACGTGTCATTTACGCACGCGATGAAACTTTTATCCGCAGAAATCGAGAGAATCCAGAAAGGCGAGCCCAAGAAGGAAGGAGGAGACTCGTATCTGGACCTTTTCACCGTCAAGAATATCAAACTGAAGGAACGCGTGCTCATACCCGTCAAACAGTATCCGAGGTTCAACTTTGTGGGGAAGATTCTTGGCCCTCAGGGCAACACAATCAAACGCCTTCAGGAAGAGACTGGGGCCAAGATCTCTGTACTGGGCAAAGGTTCCATGAGGGACAAGGCGAAGgAGGAGGGTCTGAGGAAAGGTGGCGAGGCCAAGTACGCACACCTGTCTATGGAGCTGCATGTCTTCATCGAGGTGTTTGCCCCCGTGCCCGAGGCTTACCTACGTATGGCACACGCCATGGAGGAAGTCAAGAAGTTCCTGTTTCCTGACATGATGGATGACATCTGTCAGGAACAGTTCATGGAGATGGGTTATCTGAACGGGGGCCAGGAGCACGGGCCAGGGGCCCCACGAGGTAGAGGCGGACCACCGGGCCCCAGGGGCCGAGGAGGGCCACCGGGTCAAACAGGGGCCTCCAgGGGTAGAGGTATGCTCCCACGTGGAGGTGTCACAAGGGGAGGTGCGCCCCGCGGAGGGCCAGCGAGAGTTGGAGTAGTGAGGGGGTCACCGGCAGGAAGAGGGGGACCTCCAGCTGCCCCCGCTCGAGGGGCAGCAACACCCCGAGCCAGACCCCCTGCCCCTGGGGGACCACCTAGGAtgccccctccacccccccaccagCACCAACACGGCCCAGGACCGGAACAATATGAGGAATATGCTTATGATGAGGGCTACACAGAGCCAGCGTACGAGTCATACGACAATTACTACAGTCAACCACAGGCAGAGCCAGAGTACTACGACTACGGACATGGAGAGGTACAGGAGGCATATGAACCCTACGCCCAGGATGACTGGAACGGAGCCCAGAGAGCGGCACCGGCGGGGAAGGCCCCACCTTCCAGAGCGGCTAAGGGCCCTTACCGAGAACACCCCTATAGACAATACTGAACTCACCATGACAGCGCCTAGCGACCAACGCTAACGAGTTGCCCTGACAACCAACCAACCTGTCTACCACGGCAGCTCTCGCTCTAAGCAACCCTCGACAAAAGTAATTGtccgtttttgtttttgttttggtatTTTCTACTACGATGGACTTTTACAAACAGGAAATGAGGATCTTGACTGATTGAAGCTGGTTTGATATTTCATTCAGAGCAACcctaaagcattttttttttttttttagatgggTTAGAGAATATAACTGTATTTTAGTTTGGTTTGAAGTTTTAGTTAATCTGTTTTTATCTCTGACCCTATCTCTCCCTTggctttttttttgcattgttgaccgtaaactttttttttttcttcttctttttacaTTTTGGATTTAAACTCATTTCGAGTGGAGTTGGAGACTGCTTATCCACTTGTTAGCATCTTAAGAAAAccattttttaattattttgtttaaaaaaaaaaaactttgttaAGGGACAGTTGCAGATTCCCATTTAGGCTACATTTCAAAATTCTGTTTTAATATAGCGGAGTAAAAGGAAAAATTCAACGCTGTTTCAGTTATGTAATATAGACCAAACCAAAAAAAACGTAAAAATCAAGTCAAGaggaaatagtaaaaacaaacaaatgttaATGGAATTTCTAGCAGCGATCTATTCATTCTTGATTTATAATTCCCATTTGTTTTAAATAGTCTTTTAATTAAAAGTTGTCAATTTAGATTTAGGCAGCAGGGATTATATAAATGATATTTTGTCATTGTACATTTAGAGTtttgaaatataggcctatatAACCACTGTTGAGATGGACTGTCCTCACATACTTCATTTGTTCATTAAAGTTGTTCAACATTTTTAAGTACATTTTTATTATGGCTCTGTGTTCTACTTCTTAGAAGTAGAATATGGCCTTAGATGATAAAGGGAAAACAACACGTGTTACTACAGGATCTTATTGGTTGAATCTGAGTCTATAAActgcatgtaaaaaaaaaaatgacgcaATGAAGGATTGGGACAAAAATCTCCACATGGGTTTTCTCTTTACACAGAGAAGGGATCCTGCAGTTCATTAATCTGGTGTCTTTGTAcatactttaaaaaataaaaataaaccctCCAAACTGTACGTATCCACTATTCTGCCACTGGTATATGTACCCTCTCCATTAAAAATGCATTATGCTCTATGTGTAAGGCTTGTCTAAATAGGTACTACTACATCTGCCCAGAAGATGTTTTGTAGCAGTTTGTCAATAAAGATTTAGTTTGTTTTTTTCTATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2621850 lncRNA upstream 25183 6990633 ~ 6991047 (+) True G2292385
TU2621846 lncRNA upstream 25241 6990633 ~ 6990989 (+) False G2292385
TU2621841 lncRNA upstream 46168 6969793 ~ 6970062 (+) True G2292380
TU2621837 lncRNA upstream 51697 6964324 ~ 6964533 (+) True G2292376
TU2621836 lncRNA upstream 52333 6963440 ~ 6963897 (+) True G2292375
TU2621914 lncRNA downstream 69847 7109557 ~ 7112661 (+) True G2292445
TU2622095 lncRNA downstream 76613 7116323 ~ 7116594 (+) True G2292603
TU2622096 lncRNA downstream 77068 7116778 ~ 7118313 (+) True G2292604
TU2622138 lncRNA downstream 119978 7159688 ~ 7160039 (+) True G2292639
TU2622149 lncRNA downstream 130274 7169984 ~ 7170212 (+) True G2292650
XM_036971606.1 mRNA upstream 73874 6916989 ~ 6942356 (+) False LOC110487851
XM_036971605.1 mRNA upstream 73874 6916990 ~ 6942356 (+) False LOC110487851
XR_005041378.1 mRNA upstream 73874 6916990 ~ 6942356 (+) False LOC110487851
XR_005041379.1 mRNA upstream 73874 6916990 ~ 6942356 (+) False LOC110487851
XR_005041380.1 mRNA upstream 73874 6916990 ~ 6942356 (+) False LOC110487851
XM_036971393.1 mRNA downstream 487653 7527363 ~ 7563038 (+) False LOC110487858
XM_036970850.1 mRNA downstream 532140 7571850 ~ 7590800 (+) False LOC110487859
XM_036970851.1 mRNA downstream 532140 7571850 ~ 7590800 (+) False LOC110487859
XM_036970852.1 mRNA downstream 532207 7571917 ~ 7590800 (+) True LOC110487859
XM_036971173.1 mRNA downstream 762181 7801891 ~ 7846316 (+) True LOC110489363
TU2621799 other upstream 133064 6882377 ~ 6883166 (+) True G2292347
TU2620737 other upstream 699533 6308136 ~ 6316697 (+) True G2291541
TU2620690 other upstream 854511 6161078 ~ 6161719 (+) True G2291498
TU2620681 other upstream 867984 6147824 ~ 6148246 (+) True G2291490
TU2620437 other upstream 1266772 5739422 ~ 5749458 (+) True wipf3
TU2622167 other downstream 150542 7190252 ~ 7190850 (+) True G2292666
TU2622774 other downstream 806969 7846679 ~ 7847462 (+) True G2293172
TU2622846 other downstream 874914 7914624 ~ 7917597 (+) False e2f3
TU2623110 other downstream 1035977 8075687 ~ 8078381 (+) False G2293430
TU2623111 other downstream 1035977 8075687 ~ 8078381 (+) True G2293430

Expression Profile