RNA id: XM_036970850.1


Basic Information

Item Value
RNA id XM_036970850.1
length 3871
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110487859
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 7571850 ~ 7590800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGAACGTTTTTGTAGTTCTGAGTTGAGGGTTTGAACTACATTTTCCACAAGATTGTCAGTTACGTACTTCCGTGGTTCATTGCGTATTTCCTGTATCGGTTGGCAGCAGGCAACGCCGGAGTGTGTTTATTGAGTTGGATCAAGAAGTACTCGAACAATTTGGATATCTGTTTCGGGCGTTTCATCATGAAGAAACAGGACACACAAGAGTCGTCCACGCAGGGCAGTGATGCAGCACCTGGCACGGGAGAGATGGAGGCAAGCAAGGTTACAGAGACCAGTAGCCCAAAAGAGCAAGAGCAGGACATGCCTTCACAAGCTGATGGTGCTGAAAGCGCAGTGGCTGTCGTTTCCAACACAGCAGAGTCTGCAGCCGTCCCACCTGTAGCAGACCCTGTACCAGTCTCCACTGTAGCAGACCCTGTACCAGTCTCCACTGTAGCAGACTCTGTACCAGTCTCCACTGTAGCAGACCCTGTACCAGTCTCCACTGTAGCAGACCCTGTACCAGTCTCCACTGTAGCAGACCCTGTACCAGTCTCCACTGTAGCAGACCCTGTACCAGTCTCCACTGTAGCAGACCCTGTACCAGTCTCcactgtaacagaccctgtaccCCTCCCGGTCTCCACTATAGAGGAGGGGGTGTCGTCTCAATGTGACATGGCTGAGGAGCTGAGCCGCCAGCTGGAGGACATCCTCAACACCTACTGCTTGGAGGACAACGGGGAGGACGGAGTTAACCTGCCCAACGGCCAATCATACTGCCCCATGCTCAACGGCCTGGCCAATGAGGAGTTGGATGCCAAGCCGGAGGAGGTCAAAGTGAACGCCGGCGGAGTGGAGAAAGTGAAGATTCAAGAGAAGAAGAAGGTGAAGGGGCTGGGTAAAGAGATCACCCTTCTGATGCAGACCCTGAATACTCTGAGTACTCCAGAGGATAAACTGACAGGCCTCTGTAAGAAGTATGCTGAACTGctggaGGAGCGGCGGAACAACCAGAAGCTAATGCGGGTCCTGCAGAAGAAACAGTCTCAGCTGGTGCAGGAGACGGACCACCTGAGGAACGAACACAGCAAGACCATCCTGGCACGCAGCAAACTGGAGTCACTCTGTCGGGAGCTGCAGAGACACAACCGCACACTCAAGGACGACGGGATGCAGCGTGCAcgtgtggaggaggagaagaggaaggaagtGACGGCACACTTCCAGGTGACTCTGTATGACATCCAGGCCCAGATGGAGCAGCATGACGAGAGGAATGCCAGTCTTAGGCTGGAGAACTCTGAGCTGGCAGAGAAGCTCAAGAAACTCATCCAACAGTACGAACTACGAGAGGAGcacattgacaaggtgttcAAGCATAAGGAACTGCAGCAACAGTTGGTGGATGCTAAGCTACACCAGGCTCAGGGTTTGCTCATAGAGTCAGAGGACCGCCATCACAGAGAGAAGGACTTTctGCTGAAGGAAGCGGCAGAGTCTCAGAGGATGTGTGAGCTCATGAAGCAGCAGGAGGTGCATCTCAAACAACAGCTGTCCTTATACACAGAGAAGTTTGAGGAGTTCCAGACGACTCTGTCCAAGAGCAACGAGGTGTTCACCACATTCAAACAGGAGATGGAGaagaTGACAAAGAAGATCAAGAAGCTGGAGAAGGAGACGACCATGTATCGTTCCAGGTGGGAGAGCAGCAACAAGGCCCTGCTGAACATGGCTGAGGAGaaAACTCTGCAGGAGCGTGAGTTTGACAGCCTCCAGGGGAAGGTAGGGAGGCTGGAGAAGCTTTGTCGGGCATTGCAGAACGAACGCAACGAACTCAGCAAGAAGGTACAGGGCCTTAGCGCCGGCCCCGAGGACGACACCAGCCCAGGAGATGAAtccacctccctcccccccaTAGACTCCCAGGAGCCCAGCCCAGACCCCGACACCACCACCCCTAGTTCCCCCACACCCTGCTGCCACTTCAGCCCAGAGTTGGACACTGAGAACCAGGCCTGTGCAGCCCCCCTCACTGCCCAGGAATGAAACCTCTCGCCTGGGCAACAACGCTCACACTCTCCTCTTCACCAACCAACTTCCAGCCTGCAAGCCAAGCCACTACTAACATAGGCGATAAGAGTGTGGGTCTGTGTAAATTCCCTCAAGAATAAGATGAAGTTGtcccctaaccacagatctagaatcagtttcCATTTGATCCATCCTAACTAAAAACCCAATAGGGCGATGCAAGAGAACCTGATCCTGGATTTGTAGTCGGGTAGCAGCGTCTACTTGCTCTGGTTCCCGCCTGGAGAGTTGAAGGTGATGTCAGTCAGGGGAGATTGTGCCGCCTTGAAGGTTCTTATCCTGCGTTTTTTTTGTCCTTTCCTTTCAGAACTCCTGTACGCAATGTTCATGTAAATCACAAGCTAAGGAAAGCCTGCTCCCCaattggcatcctattccctatatagtgccctatatTTCACCAGAACCATATGGGAATAGACTGTcacaattggcaccctattccctaaatagtgccctATATTTCACCAGAACCATATGGGAATAGACTGTcacaattggcaccctattccctaaatagtgccctATATTTCACCAGAACCATATGGGAATAGACTGTcacaattggcaccctattccctaaatagtgccctATATTTCACCAGAACCATATGGGAATAGCCTGTGTcacaattggcaccctattccctaaatagtgccctATATTTCACCAGAACCATATGGAAATAGACTGTGTCACaatttgcaccctattccctaaatagtgccctATATTTCACCAGAACCATATGGGAATAGGCTGTGTCACAatttgcaccctattcccaaaaTAGTGTCCTATATTTCACCAGAACCCTAGATGATGTTGGACCACAAGAGTATTTAGTAGGTGTGTGCCTGTCTCCATCGGTCTTTCGTGTGTGTCCGTGATACAGTGAAGCAGCAGATGTCTGGCCACAGTTGGACTTCAACCCAGAGCATGTAGGGATCATCACCTTTTCAGTTCAAAGATCAGTGTGTATATCTCTAGGTTGGGGATGTCACTTTTTTTCATTCTGTTCTAGATATCATTGTTTATCCTAGAACCAGAGGTCCAGAGCGTTAATGGATAATGTACGTATTCTGTAGGAATCTTGCGCAATCGGTGGATCTACAGAAAGTACTCTAACCAAGGGGTGTGTAATGTCTCGGAACCAACAGGAAGCTAATAGGGCAAACCAGGGAAGGGACTaaactgaacttgtccaatatGAAACgtgttttccattgcaaaatgtttcacTACAGTGTGCACTACTGAATACACCCCAAGAATAGAGGGAATAGCCTtgtgttttggtttgtttctttATATCATGTTACACAGCAGAGTTTGTAGACTGTTTTTTGATATGTTATTTTAACACCTGTGTATCTAATGGAGATTCACCACTATATATAGATATCAGTCCAAAAAAAAACGAATGGTTAACTAATTGAGATTGTTTTTTTTCGTCATCATTCCCACAATATGCATGTATCCATTCCACACGCTCATATTCCTTGTTTTCCCAATGTCATTCTACAACATTTGATCCGATGGAATGTTTTTTTCATGCTGCCTTTCCTTGCTATCATGAGCCATGTATATGTTTAAGATGTAAGATTCCATTAACCACTAAAACAGATATTGAAATGTACTGACCAAGGTTGGCTACCAATAATTAATgcctgtgtgtgggtgagtgagtgtaCGTATCTTAGCAAGATTTGTTGAATCACAACTCGGATAGTTCGATTTGTTAATCAGGTGCAAGTAATAAAATATTTTAACTGATATATCTATGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2622498 lncRNA upstream 107 7567342 ~ 7571743 (+) False G2292947
TU2622500 lncRNA upstream 107 7569171 ~ 7571743 (+) False G2292947
TU2622499 lncRNA upstream 107 7570068 ~ 7571743 (+) True G2292947
TU2622501 lncRNA upstream 4090 7567342 ~ 7567760 (+) False G2292947
TU2622512 lncRNA upstream 7895 7562896 ~ 7563955 (+) True LOC110487858
TU2622534 lncRNA downstream 7390 7598190 ~ 7599077 (+) True G2292973
TU2622562 lncRNA downstream 42369 7633169 ~ 7637345 (+) True G2292989
TU2622565 lncRNA downstream 48122 7638922 ~ 7639132 (+) True G2292992
TU2622580 lncRNA downstream 70414 7661214 ~ 7661429 (+) True G2293001
TU2622589 lncRNA downstream 95274 7686074 ~ 7686283 (+) True G2293008
XM_036971393.1 mRNA upstream 8812 7527363 ~ 7563038 (+) False LOC110487858
XR_005041290.1 mRNA upstream 527091 7016230 ~ 7044759 (+) True LOC110487852
XM_036970885.1 mRNA upstream 532140 7016230 ~ 7039710 (+) False LOC110487852
XM_036970886.1 mRNA upstream 532140 7016230 ~ 7039710 (+) False LOC110487852
XR_005041380.1 mRNA upstream 629494 6916990 ~ 6942356 (+) False LOC110487851
XM_036971173.1 mRNA downstream 211091 7801891 ~ 7846316 (+) True LOC110489363
XR_005041317.1 mRNA downstream 288339 7879139 ~ 7879576 (+) False LOC118946479
XM_036971314.1 mRNA downstream 306861 7897661 ~ 7919450 (+) False e2f3
XM_021559778.2 mRNA downstream 607864 8198664 ~ 8202360 (+) False LOC110487863
XM_036971670.1 mRNA downstream 819604 8410404 ~ 8420764 (+) True si:ch211-152p11.4
TU2622167 other upstream 381000 7190252 ~ 7190850 (+) True G2292666
TU2621799 other upstream 688684 6882377 ~ 6883166 (+) True G2292347
TU2620737 other upstream 1255153 6308136 ~ 6316697 (+) True G2291541
TU2620690 other upstream 1410131 6161078 ~ 6161719 (+) True G2291498
TU2620681 other upstream 1423604 6147824 ~ 6148246 (+) True G2291490
TU2622774 other downstream 255879 7846679 ~ 7847462 (+) True G2293172
TU2622846 other downstream 323824 7914624 ~ 7917597 (+) False e2f3
TU2623110 other downstream 484887 8075687 ~ 8078381 (+) False G2293430
TU2623111 other downstream 484887 8075687 ~ 8078381 (+) True G2293430
TU2623152 other downstream 514828 8105628 ~ 8106009 (+) True G2293464

Expression Profile