RNA id: TU2622823


Basic Information

Item Value
RNA id TU2622823
length 1244
lncRNA type read_through
GC content 0.42
exon number 2
gene id LOC118946479
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 7878210 ~ 7881862 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaatttacCCCCGACCTTGGTTGTAAACAAATAGATGTCCACTCTGGGCCACCGTAGTAGTGGACATAAGAGCCTGGAGTTACTACTGACCCCTTGACCTGACCAGGTCGGCATATTTAACAGCTGTTTGGCTGTTGTTTGGCAGACCGGGTTCATTCATATACCAAATCGTTTCCTTTCCCTTTTAAGACAACACTGACCGGTGTGGAGATATCTCAATCCACTACACTGGCTtccttctctcatctcctttcctttTTAAGACAACACTGACCGGTGTCTAAGAGCAATGGGCTTCATATAAAGGAGACTGGGGCTGCATGGGAGATATCTCAATCCACTACACTGGCTTCCTTCTTTCACCTCCTTTCCTTCATGATAGGTGAGAGAGGCTTTCACCATATGTTGCTTCCACCTGCCAGATCAGAGATGACGAAGGAAAGGTTCAATGAAAGGAAGCACGCTTACACTATTGAGACAGCCCAGGTCCTATATCTAGATTGGGGAAGTAACCTATTATACTCActgcttaaataaaaaaaaatgtaaaaagaatTTGCAAGGCACAGTGAAATTTACAACTGGTAAACATCTGTTACCTAGACATCATTAAATCCAGTAGGTTTTTAGTAATATGGCCTAACGACAGATTCTAATTTGGTCCAAAAGGATAGACAGGTTTGAGTGCATTTGCAGCAAACAGATGACACCTCTTAACCTTTCGGCAGTACCTGGTCATCTCTTAACCTTTAGGCAGTACCAGGTCATCTCTTAACCTTTAGGTAGTACCAGGTCATATCTTAACCTTTAGGCAGGTCATCTCTTAACCTTTAGGCAGGTCATATCTTAACCTTTAGGCAGTACCAGGTCATCTCTTAACCTTTAGGCAGTACCAGGTCATATCTTAACCTTTAGGTAGTACCAGGTCATCTCTTAACCTTTAGGCAGTACCAGGTCATCTCTTAACCTTTAGGCAGTACCAGGTCATCTCTTAACCTTTAGGCAGTACCAGGTCATATCTTAACCTTTAGGTAGTACCAGGTCATCTCCATTGGCAATCCAATTGTGAAAGATCTGTATTTCTTGACCGGAGTGTTGGAGTTAATTGATAATCCCGGATGTTGTTTGGAGTAAAAGGGTGAATGTGAGTTGATGTACAAATTGGTGATCTTTCCAAGACCACTGGTATAGAGAAATGTACATTACCATTGTTATCGTCATAACTAAACTGAAATGTGTTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2622822 lncRNA upstream 385 7876740 ~ 7877825 (+) True G2293212
TU2622815 lncRNA upstream 11724 7865629 ~ 7866486 (+) True G2293206
TU2622812 lncRNA upstream 17008 7860416 ~ 7861202 (+) True G2293203
TU2622809 lncRNA upstream 20829 7856183 ~ 7857381 (+) True G2293201
TU2622803 lncRNA upstream 24644 7853334 ~ 7853566 (+) True G2293199
TU2622831 lncRNA downstream 4107 7883682 ~ 7884044 (+) True G2293216
TU2622861 lncRNA downstream 26268 7905843 ~ 7906341 (+) True G2293233
TU2622850 lncRNA downstream 39494 7919069 ~ 7920212 (+) True e2f3
TU2622847 lncRNA downstream 41861 7921436 ~ 7921804 (+) True G2293226
TU2622851 lncRNA downstream 42343 7921918 ~ 7922324 (+) True G2293228
XM_036971173.1 mRNA upstream 31894 7801891 ~ 7846316 (+) True LOC110489363
XM_036970850.1 mRNA upstream 287410 7571850 ~ 7590800 (+) False LOC110487859
XM_036970851.1 mRNA upstream 287410 7571850 ~ 7590800 (+) False LOC110487859
XM_036970852.1 mRNA upstream 287410 7571917 ~ 7590800 (+) True LOC110487859
XM_036971393.1 mRNA upstream 315172 7527363 ~ 7563038 (+) False LOC110487858
XM_036971314.1 mRNA downstream 18086 7897661 ~ 7919450 (+) False e2f3
XM_021559778.2 mRNA downstream 319089 8198664 ~ 8202360 (+) False LOC110487863
XM_036971670.1 mRNA downstream 530829 8410404 ~ 8420764 (+) True si:ch211-152p11.4
XM_036971683.1 mRNA downstream 624049 8503624 ~ 8506000 (+) True tnfa
LOC118946524 mRNA downstream 947335 8826910 ~ 8833518 (+) True LOC118946524
TU2622774 other upstream 30748 7846679 ~ 7847462 (+) True G2293172
TU2622167 other upstream 687360 7190252 ~ 7190850 (+) True G2292666
TU2621799 other upstream 995044 6882377 ~ 6883166 (+) True G2292347
TU2620737 other upstream 1561513 6308136 ~ 6316697 (+) True G2291541
TU2620690 other upstream 1716491 6161078 ~ 6161719 (+) True G2291498
TU2622846 other downstream 35049 7914624 ~ 7917597 (+) False e2f3
TU2623110 other downstream 196112 8075687 ~ 8078381 (+) False G2293430
TU2623111 other downstream 196112 8075687 ~ 8078381 (+) True G2293430
TU2623152 other downstream 226053 8105628 ~ 8106009 (+) True G2293464
TU2623385 other downstream 470638 8350213 ~ 8350683 (+) True G2293677

Expression Profile