RNA id: XM_036970930.1


Basic Information

Item Value
RNA id XM_036970930.1
length 4942
RNA type mRNA
GC content 0.44
exon number 20
gene id LOC110489365
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 8907450 ~ 8934029 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttttaaacgttttttAGTCATTTCCCGCAACCAGTAGTGGGCGGCAATACACCATTTCCGGTGTTGTCCGCCGTAAAACACCACCATCGAAGAAGATTATTAAGGTCAGATTGATACAAGAAGTGAAGATGCCGACTGCCTACGAGAGGTTCAATTTGCACACCAGCCCAGAGAAGTTCTACATTGAGGCCTGTGATGACGGGGTGGATGCAGTTCTGGCCATCGACAGGGTGTCCAATGAGATGACCCTGACTGGGAAGAAGGATGTTCCGTCGTCAGCCAACACCAGGCCCATCTGTGGCATCATGGGAACTGTCCGCCTGGTGGCAGGGATGTACCTGATTGTCATCACCAAGAAGAGGAATGTGGGCAGCCTCTTGGGTCACGCTGTGTGGAAGGCAGTGGATTTTGACATCATTTCCTACAAAAAGACTGTGCTTCACCTCACTGAGAACCAGacgcAAGACAACAAGACATTCCTGTCCATGATTAACAACGTGCTGACTACAGATGGATTCTACTTCTGCACTGACTATGACCTGACCCACACCCTCCAGAGACTGGCCGACGTCAGCCACGACTTCCAGGAAATGAGCCTGctggagaggGCAGATCAGAGGTTTGTGTGGAATGGAAGCCTCCTGAGAGAGTTCCTTACCCAGCCGGAGCTCCACAAGTTTGCGATCCCTGTTGTCCATGGCTTCATCGTGATGAAACCGTGTCGTGTCAACGGGAAGATCTTTGAATGGATCCTCATCTCCAGGAGGAGCTGCTTCAGGGCTGGGGTCAGGTACTACGTCAGAGgtATCGATTCTGAGGGCCACGCTGCTAACTTTGTGGAGACTGAGCAAATAGTCCTGTACAATGGAGGAAGGGCTTCATTCGTACAGACACGAGGCTCCATGCCCTTCTTCTGGTCTCAGAGACCCAACCTGAAATACAAGCCCAAACCACTGATCAGCAAGAACACCAATCACATGGATGGTTTCCAGAGGCATTTTGACTCCCAGGTCCTCATCTATGGAAAGCAAACCATTCTGAACCTGATCAACCAGAAGGGTTCAGAGAAGCCACTGGAGCAAGCCTTTGCCAAGATGGTGTCTGGCATGGAGAACGGCATGATCAAGTACGTAGCATTCGACTTCCACAAGGAGTGCAGCGGGATGAGATGGGATCGTCTGAATATCCTGGTGGACAATGTGGCTGAGACACAAGATGAATACAGCTACTTCATGGTCGACGCGGCGGGGAAGGTGTTGTCCCAGCAGAAGGGGACGTTCCGCAGTAACTGCATGGACTGTCTGGACCGTACCAATGTCATCCAGAGCATGCTGGCCCGCCGTTCCATACAGTCCCAGCTACAGAGGATGGGTGTCCTGCATGTGGCCCAGCGGATTGAGGAACAGGCCGATTTTGAGAAGATCTACAAGAATGCTTGGGCTGACAATGCCAACGCATGCGCCAAGCAGTACGCCGGTACGGGAGCCCTGAAGACTGACTTCACAAGGACAGGGAAGAGGACCCAGATGGGTCTGGTGATGGACGGCGTGAACTCTGCCATCCGTTACTACAAGAATAACTTCTCTGACGGTTTCAGACAAGATTCCATTGATTTGTTCCTTGGAAACTATGCTGTTGACGAAACGGACGGCCCCACTCCACTCCGTATCCAGAAGGACTGGAAGTTCCTCACGCTGCCCATCATCATGGTGGTCGCGTTCTCCATGTGTATCATCTGTCTCCTCATGGCTGGTGACACGTGGACTGAGACCCTGGCCTATGTGTTGTTCTGGGGCGCTGCCGCCGCCGTCACCGCTGCTGTCATCGTCTTCAACGGCCGCGACTTTGTGGACGCCCCCAAACTGGTGCAGAAAGAGAAGATGGACTGAACCTGTGTGTATGTGGAAAGCAGCTCGGCTCAGCAGACTCCTATACCTCTTAATTcaactcttcctcttcttcctcccggCTGCTCGAGGCTCGGACTCTGCACATAACTGCTCTCTACGCTGTCGTCCTAGGGggcggcatcccaaatggcaccctattccctatatagtgcactttaatggggtgccatttgggatgtagccttaTAGTTTCTATTGGGGCTTCTATTCTAACCCTGAACTCCTGTTTATCAGGCAGCAAACCCGTTGAGCTGAACTGTAGTCTCCTATCAGACTCTCTCACCTCCTTCACTTTCCAGGCCATCATCCTATTCCACATTCCTTAGATCATGGTGTTTCATTTATTTTGTTGTCTGGTGTTGGAGAGGGTTGGTGGTTGGCGTAGTCGGCCGACCGTGGTGACGGTTTAACCAACTTAAGGCACACAGGGTTATTAGAGTTCTCTGAAAACACGTCACAACTTCAGTGAATTGCAGGAGAATTCTTCATTTTCCACTAAGGCAACTTAAACAAGAATATTCATGTAATACACTAATGAATGGTTTCTTTGGTTTAACTATTGTTTACTGTAATTtaataaaatgcaattatgtATTTTAAACTAGAAATCCACAGAGAAACGGTTGGCATTTTCACAGGCACTAGAATGACTGGGGTACATTGTTCAGAAAGATAACATGTTTTGGTTGTCCTATTGAACGTAATAAGCCTTACTAAACTCATTTTAAAAAGCGCTATACAACTAAACTAGCTAGTTATCCTAGAGAAGAATGACGTGGAGGGGGAGAATGTCTTCCTACTATGAACATAATCATGTATAGTATTTATGATTCTATTTATAAGTAAGGGTTTTGTGCTTGTCTTACCATCTTAGTTTTGCACTTTGGGTGAACATCTAAGAAGTTGCACATAGTATTTGATCTGAGAGGTGTGAAATCTTtcaatgttcattaattgttggTTGTAGTGGTCATTATACCAGtgttctccaaccctgttcccggagagctgcAGTCCTGTAAGTTCATTCCAACCCTTACCTAGCTCACCTATTAGCTGGTTGATCAGCTGAATCAGGTtcgttacaactggggttggagcaaaaacctgcaGGAGgctagctctccgggaacagggttggagagccctgcgcTAATACCGTAGTTGTCATGTGGTGGCCATTTTCCAGCTGTTTATAATAAccttgtcttgtctgtgtgttctaGTTGACGTCTCACACGTTTTTGAAGTGTTATCTTGCTGAGGGTTTTCCCCCTAGCACTACTAAAACCCTCAGTGGATTGAGTTTCATACTCCTGCTCTAGATCGGTGTTTTCCaaacctggtcctccagtaccccaaacaGTAAACACTATTGAAACCCTTTACAAGCACACTTGATTCAACTAATCGTCAAGCCCATCAATGAGTTGAACGAGGTGTGTTTGTAGCCCTTGACAATTCAACTGTACTGTTGGTGGACCAGGGTTGGAAAACACTGATTTTAGATACTGCCTTAACAAGCTCGCCCCACAATGGATGACGGGGTGGACTTAAGATAATCGTTCCTTGTTCTCATGAATATGATTGCGTCAGATTAATGGTTTTCAGGGTGTTTCCAGATGTACTGTATTCATTAGAGATTGTATTGTAGACTGTTTATGTTGCTATGCCTTTCTGTGCCTGCTTTCCAGCTTGGATTTCGATCTTGCATTCATAATACAGAAGTAGTTGTCATGGTGTAAATATTCTAGAACAGAATTGCAATTCCATTGCTCATTTAGAATGTGTTTGTAGTAAGTTTTAGATCTTTAGTTAAGTTAGAATCATGTTTATATGCTAGAACTGTTTTATTCAAGCTGGGCAGTGGTAACACCAGAGGGGAGGACCAACTCAAGCTTGTCTACTGTGCTACCGTTATGCGTTTCCATGAACATATCCTTGTAATTATATAAACTGTATATTTTACATTAAGattgtatgctgagcacttagtTGCAGATACTAAATGTAAAGATCAAGCAGTGGTTCTTTGTTTTTCTTCTTTCTGGATGAGACTTTAGAAGAAGTGTTTCGTGTGAGTCAACAAGAGCATTTTTTTTTGAAGGTGTATGATTTTGCCTGGtgaatatttctgtttttatatgGGGATTGGAAACTATCTTGGGCTTATGTTTTGAATGTCTTTATTTTGGAATATGGTTGTTGTATTCATGATGTGGTAGtggataatattttttttaattatctcCTTTCCTCATCACCATTCCTTGGTTGTTTATTCAAAACCCTGAACATTCATTTCCTATGACCATAATACATTTTAACTGGACtgatgtagcctggtcccagatctgtttttgcTATAATGCCAGTCCTTGTCATGACAATGGGTGACCATGGAATTtgcatgatagcacaaacagactggaacCCAGGCTAGCTTTGAAGATTCTGGCTAGTAAATCAACTGAGGTCAGTTGTACACATACCTAAATATGGTCAATTctcataactttttttttttttttttttcattttgcaAATGTAAGTGGCAGGCTGTTACTGAAACTAGTGATTTATCGTCACGTGCTGTGACATTGGTTTGCTAGAAAGACCATATTCCCAGTTGGTGCCGTGTAACGTCAGAATGTAAAAAGAAAATGACATCCTTCTTCAAAAATTGTTACTGAGTGGTTCAGCGGTATGACAGGATCAGTAGCTTACTACACTTTAAAAAACTTAACATCACATGGTTATACTTTTGCAATCCGATTGGCTATAACCTAAACAAAGTTAGATATTTAACTCGCAATGTAATTTAGAGGGTAGTCGCAGATGTCCTATTTTCATAATGAATGGTCAAATACCTGAAGATAGGATAGCCTATCCTCTTGTCCGAGAACTAGGCGATGACCTTGCTGTGAATGCAATTATGTAAACTGTCAATTGACACATTATTCCCCACTTTGTAATTCCATGTGAGGTTTATGGATGATTTATCAATAAacgactatttaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2623768 lncRNA upstream 14 8907485 ~ 8907781 (+) True LOC110489365
TU2623820 lncRNA upstream 658 8906839 ~ 8907137 (+) True G2294001
TU2623819 lncRNA upstream 967 8906561 ~ 8906828 (+) True G2294000
TU2623750 lncRNA upstream 31331 8791101 ~ 8876464 (+) True G2293942
TU2623806 lncRNA upstream 59364 8847924 ~ 8848431 (+) True G2293988
TU2623891 lncRNA downstream 87501 9021530 ~ 9021761 (+) True G2294046
TU2623896 lncRNA downstream 93755 9027784 ~ 9028128 (+) True G2294051
TU2623903 lncRNA downstream 104167 9038196 ~ 9038405 (+) True G2294058
TU2623884 lncRNA downstream 112591 9046620 ~ 9046966 (+) False LOC110489366
TU2623907 lncRNA downstream 113451 9047480 ~ 9047735 (+) True G2294062
XM_021559789.2 mRNA upstream 11599 8891639 ~ 8896196 (+) True LOC110487872
LOC118946524 mRNA upstream 74277 8826910 ~ 8833518 (+) True LOC118946524
XM_036971683.1 mRNA upstream 401795 8503624 ~ 8506000 (+) True tnfa
XM_036971670.1 mRNA upstream 487031 8410404 ~ 8420764 (+) True si:ch211-152p11.4
XM_021559778.2 mRNA upstream 705435 8198664 ~ 8202360 (+) False LOC110487863
XM_021559790.2 mRNA downstream 101 8934130 ~ 8942477 (+) False LOC110487875
XM_021559791.2 mRNA downstream 102 8934131 ~ 8942477 (+) False LOC110487875
XM_021559792.2 mRNA downstream 115 8934144 ~ 8942477 (+) False LOC110487875
XM_021559793.2 mRNA downstream 115 8934144 ~ 8942477 (+) True LOC110487875
XM_036970689.1 mRNA downstream 8969 8942998 ~ 8954950 (+) True stx12
TU2623755 other upstream 60543 8844013 ~ 8847252 (+) False G2293943
TU2623757 other upstream 60543 8844013 ~ 8847252 (+) True G2293943
TU2623741 other upstream 112293 8791101 ~ 8795502 (+) False G2293942
TU2623927 other downstream 160763 9094792 ~ 9103186 (+) True G2294081
TU2624382 other downstream 401306 9335335 ~ 9337755 (+) True G2294452
TU2624966 other downstream 1196087 10130116 ~ 10131651 (+) False G2294925
TU2625098 other downstream 1384823 10318852 ~ 10323588 (+) True LOC118946540
TU2625227 other downstream 1580925 10514954 ~ 10521307 (+) True LOC110487904

Expression Profile