RNA id: XM_021559793.2


Basic Information

Item Value
RNA id XM_021559793.2
length 1265
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110487875
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 8934130 ~ 8942477 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTGCGCAGAAACGTCCCTGTTGCCTCTTCCGACACGACACTTACAAGGGGCTGCATGTGTTATTTCGGGGATTAACAactgtaaatgtaaaaacaattaAATAAGGTTGACAACTACAGGTCTTAACATGAGCACGCTATGGATGGGAAACTCTGTTTGTTAGTTGGAGCCCTACATGGACGAAAACTTCATAACCCGAGCCTTCGGCACTATGGGGGAGTTGGTGGTGAGTGTACGGATTATACGCAACAAGATGACCGGGGGTGCAGCAGGCTACTGCTTCGTGGAGCTGACGGATGAAGCCACAGCTGAGAGGTGTCTTCGTAAAGTCAATGGAAAAGCACTGCCAGGAGCCACACCGCCCAGAAGATTTAAATTAAACCGGGCCACTTTTGGGAAGCAAGGAGAAAGCAGTCCACTCTATTCTCTGTTTGTTGGGGATCTCACACCTGAAGTGGATGACGGGATGCTGTACGAGTTCTTCTACAACCGCTATCCATCCTGTCGTGGGGGGAAGGTGGTGCTGGATGGCACGGGGAACTCCAAGGGTTGTGGGTTTGTCCAGTTCCCAGACCAGAGGCTTCAAAAGCTGGCCCTGGAGGAGTGTCAGGGAGCGGTGGGGCTTGGGAGCAAGCCCCTACGACTGAGCCTAGCTGCTAACAAAACTAGGCATAATCAATCAGACAACAGGGGGTGGGGGTCACATGGAGGAGGCTACAGACACAACCAGCAACAATACAATCAACAGTCATATGGTGGTGGATGGGGCTCTTGGGGCTACGACCAGAATGGAGGCAACTATGGCGGCTACAACTACAACCAGTATGATTACACACAGAATTTTGCACAGGAAAATGAAGCTGTTGAAGAGGATGGTCTGGAAGATCCTAACCCAGAGCTGGATGTGTTGGAAGCCAACAGGAAGTTTATGGAACACAGTGAGGAACTGTATGATGCCCTTATCCAGTGCCACTGGCAACCCTTGGAATCCTCAGAACAAGCATTTGGAACCACGAGTAGCCTTCCAGAACCTGTCTACTGTTGAGGCGTACAATGGAATGGCAATATCCTCTTTTGCCATGTTctttggtctttcatattatattCTGTAAATGTTTGATCATGGAAAGGTTAAAGACAAATCCCCAGTCCTTGGCCATAACTGCCATTTGCTTtacaatacttttttattttatttttttttttaattgacaaGCGTTTTATTTTGTGTATCTTTATTAAAAGTCATGCTGTGCCTAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2623768 lncRNA upstream 26363 8907485 ~ 8907781 (+) True LOC110489365
TU2623820 lncRNA upstream 27007 8906839 ~ 8907137 (+) True G2294001
TU2623819 lncRNA upstream 27316 8906561 ~ 8906828 (+) True G2294000
TU2623750 lncRNA upstream 57680 8791101 ~ 8876464 (+) True G2293942
TU2623891 lncRNA downstream 79053 9021530 ~ 9021761 (+) True G2294046
TU2623896 lncRNA downstream 85307 9027784 ~ 9028128 (+) True G2294051
TU2623903 lncRNA downstream 95719 9038196 ~ 9038405 (+) True G2294058
TU2623884 lncRNA downstream 104143 9046620 ~ 9046966 (+) False LOC110489366
TU2623907 lncRNA downstream 105003 9047480 ~ 9047735 (+) True G2294062
XM_036970929.1 mRNA upstream 115 8907450 ~ 8934029 (+) False LOC110489365
XM_036970930.1 mRNA upstream 115 8907795 ~ 8934029 (+) False LOC110489365
XM_021559789.2 mRNA upstream 37948 8891639 ~ 8896196 (+) True LOC110487872
LOC118946524 mRNA upstream 100626 8826910 ~ 8833518 (+) True LOC118946524
XM_036971683.1 mRNA upstream 428144 8503624 ~ 8506000 (+) True tnfa
XM_036970689.1 mRNA downstream 521 8942998 ~ 8954950 (+) True stx12
XM_036971530.1 mRNA downstream 63170 9005647 ~ 9019469 (+) False LOC110487879
XM_036971528.1 mRNA downstream 69551 9012028 ~ 9019469 (+) False LOC110487879
XM_036971529.1 mRNA downstream 69566 9012043 ~ 9019469 (+) True LOC110487879
XM_036970783.1 mRNA downstream 104119 9046596 ~ 9162496 (+) False LOC110489366
TU2623755 other upstream 86892 8844013 ~ 8847252 (+) False G2293943
TU2623757 other upstream 86892 8844013 ~ 8847252 (+) True G2293943
TU2623741 other upstream 138642 8791101 ~ 8795502 (+) False G2293942
TU2623927 other downstream 152315 9094792 ~ 9103186 (+) True G2294081
TU2624382 other downstream 392858 9335335 ~ 9337755 (+) True G2294452
TU2624966 other downstream 1187639 10130116 ~ 10131651 (+) False G2294925
TU2625098 other downstream 1376375 10318852 ~ 10323588 (+) True LOC118946540
TU2625227 other downstream 1572477 10514954 ~ 10521307 (+) True LOC110487904

Expression Profile