RNA id: XM_036971528.1


Basic Information

Item Value
RNA id XM_036971528.1
length 2452
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110487879
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 9005647 ~ 9019469 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGAAAAGGTGAAATATGATACAGTAAATTGATTGTCTGTAGAAATAGCTCTTCTCTCAGGAATTAGGAAAGAAAACCATCTGGAATTGAAATATTTTCACCCCTTTGGGTCGCGTGTCATGACTCTTGTTTCCCCGGCTCCGGCCCGCCTCGCGGACTATTTAAAGATTCTCCTCTCCGTGCCTCAGTCCTCGAGCCCTGCAGCGAGTCAACACAGCCGATTGACTGTAGAGCGCGAGAAAAGGGAAACTCCTGTCTGTCTGAACGAAAACAAACGGGTTGTAGTGTGCACGCTGTTAAAATAAACTAGCAACAATGTCTGAGGAAATTATTACCAGAATGTGCCTTTTTCTACTCATCGTCTGCTCGACAATGGCCCAGGACTGTTCCGATCCCTGTGACTGTCCCTCGGACCCCCCTCCATGCCCGTTTGGTACCAGCCTGGTTCTGGATGGCTGTGGTTGCTGTAAGGTGTGTGCCAGGCAAGCCGGCGAGCACTGTACCCTCCTGGAGCCATGTGACCACCACAGGGGGCTTTACTGTGATTATGCAATGCTGAGTGACACTGAGCACGGCATCTGCATGGCCCAGGAAGGCCAGACGTGCGACCTGGGAGGGGTCATCTACCGCAGTGGTGAGACCTTTCAGCCCAGCTGCAAGCACCAGTGTGTCTGTATGAACGGAGAGATCGGCTGCGTGCCAACCTGTGCCAACAACGTGCTGCTGGCCTCTCCAGACTGCCCGTACCCACGCCGCATTCAGATCCCTGGGAAGTGCTGTGAGGAGTGGGTGTGTGATCAGAGCCCTCAGGACCACCCCTACCAGTCAGCCATGGCTGGATCTGAAATTCACCCCTTGGTCTCTTCTTCCCCTCTATCAGTCTACAGAGAGGTGTCAGCCCACGGGCCGGTCCCGGTGGAGAGCCCCAGGGAGAACTGCATCGTCCAGACCACCAAATGGGACGAGTGCTCGGCCACCTGCGGCATGGGCGTGTCGTCCCGCGTCACCAATGACAACGAGCGGTGCCAGCTGGAGAGGCAGACCCGTATCTGTATGATCCGGCCCTGCCACGTGGAGCAAGAGAAGGACATCAAGAGGGGGAAGAAGTGTGTACGGACCCCCAAGTCCCCGCGAGGCGTGCGTTTCCAGCTGTCAGGCTGCAGCAGCAGGAGGGTCTACAAGCCCAAGTTCTGTGGTGTGTGTACGGACGGGCGCTGCTGTACCCCCCACAGCACCGTCACCGCAGAGGTGGAGTTCCACTGTCCCGAGGGAGACGCCTTCAGACGCAAGATGATGTTCATCAAGACGTGCTCCTGTCACCACGACTGCCCACGAGACAATGACATCTTCCTGGCTTCGCACACACGCAGGATGATCGGGGACTATGACAACGATATGTAAACATCATGGCTGCCAAACAAACTGACAAACACATcagcccatacacacacacacacacacacacacacacacacacacacacacatatacacacactgataAAACTACTTCAcatcgctctcacacacacataggcagctTTTCGAATTCCTGGACCCCTGTCTCTACCTTACTACCCATAGACATGTCTACCTAGTGGTGAGACTGAAAACAAGTTTGTGAGTTCAAGCATGAGATTGACTCTTTAGGATTTCTTTTGTTACTTTCGTTTTGAAGTTTTATTTGGGTTTTTAAACGCGCAGCTCTAAAGTCACCTGGCTCTTTGACTCGTCTGCCTGTGTATCTACAGAGATACTATAGGGTGGATCTGACGCACTGAGGAATCAATGTTAGCGACAAGTAGCACATCACTTAGGAAGGTATACAGTTATATTCACTGCTAAAGGGTTATAGGAGCATGACACGGTAGTGTACAGATGAGCAGAAGGTACTTACTCAAACAAATGTCACATTTTGACATAAAATGTTAgaatataacatttaaaaaatatatatatatatattcatatgttAAAGATTAGCAATACAGAAATAGTTTGAATATATTATACTACTAGTATGTGCCTCGACTGATCTGCATATTATtgagtgaatatatatatatatatatatatgtataattatATACACCTGACACAAAACTATTGGAAATGTTTATGATTGAGTCTTTTAACTTCGACGGGGACGTTACCTATATCTCTCATTATTTAGTCACTTCATTAGTTGTTGCCCActgatatatttttttgtttagtCCAACGTAAGAGTTTGGGTCCCTAAAAAATAGCTTTGTCTGACCGTGAAATTCACGTTCACAGCATGGTCAAAAAGAGACTAAAATGACTAAAAtccaaaggtaaaaaaaaaaactctagtcCAAAAACACTAAAAACCAAAAAAGTGGCTTGGTTGAAGAATGTAAATAATATTATTTACTGTTAATTTAAAAAAGGGAAAGAAAGAACAAAGGAAATAAATAAATTCTGCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2623768 lncRNA upstream 104247 8907485 ~ 8907781 (+) True LOC110489365
TU2623820 lncRNA upstream 104891 8906839 ~ 8907137 (+) True G2294001
TU2623819 lncRNA upstream 105200 8906561 ~ 8906828 (+) True G2294000
TU2623750 lncRNA upstream 135564 8791101 ~ 8876464 (+) True G2293942
TU2623891 lncRNA downstream 2061 9021530 ~ 9021761 (+) True G2294046
TU2623896 lncRNA downstream 8315 9027784 ~ 9028128 (+) True G2294051
TU2623903 lncRNA downstream 18727 9038196 ~ 9038405 (+) True G2294058
TU2623884 lncRNA downstream 27151 9046620 ~ 9046966 (+) False LOC110489366
TU2623907 lncRNA downstream 28011 9047480 ~ 9047735 (+) True G2294062
XM_036970689.1 mRNA upstream 57078 8942998 ~ 8954950 (+) True stx12
XM_021559790.2 mRNA upstream 69551 8934130 ~ 8942477 (+) False LOC110487875
XM_036970783.1 mRNA downstream 27127 9046596 ~ 9162496 (+) False LOC110489366
XM_036970784.1 mRNA downstream 27127 9046596 ~ 9162496 (+) False LOC110489366
XM_036970785.1 mRNA downstream 27127 9046596 ~ 9162496 (+) False LOC110489366
XM_036970787.1 mRNA downstream 27127 9046596 ~ 9162496 (+) False LOC110489366
XM_036970788.1 mRNA downstream 27127 9046596 ~ 9162496 (+) False LOC110489366
TU2623755 other upstream 164776 8844013 ~ 8847252 (+) False G2293943
TU2623757 other upstream 164776 8844013 ~ 8847252 (+) True G2293943
TU2623741 other upstream 216526 8791101 ~ 8795502 (+) False G2293942
TU2623927 other downstream 75323 9094792 ~ 9103186 (+) True G2294081
TU2624382 other downstream 315866 9335335 ~ 9337755 (+) True G2294452
TU2624966 other downstream 1110647 10130116 ~ 10131651 (+) False G2294925
TU2625098 other downstream 1299383 10318852 ~ 10323588 (+) True LOC118946540
TU2625227 other downstream 1495485 10514954 ~ 10521307 (+) True LOC110487904

Expression Profile