RNA id: TU2623884


Basic Information

Item Value
RNA id TU2623884
length 347
lncRNA type sense_over
GC content 0.39
exon number 1
gene id LOC110489366
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 9046596 ~ 9162941 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccggataataacacacatggaattgcCACTCTGTTTATCCAATGCGTGAAAGTGATAGGCAACCAACCGTCGATATTCACTGAGGAGTATTTCTTTATTTTCATAACATATATAGAAAAAGGTAAGTGCAATGTGAAACTTTGCACATTAACAATGGATTATGTATTGTGTGATGCGAGGaaataaatatgttgaaattTTTGTTCACATTCGGCGCCATTTTCGGACAGACCTTTTAAACACCTGCCGTCCGCCTGTTCTCGACACGTCTCCGGTGCTCGGATTGATTTTTATAAAACAACGTTGCATTCTAACCGATACATGTTTACCCGTTTCATTGATCGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2623903 lncRNA upstream 8215 9038196 ~ 9038405 (+) True G2294058
TU2623896 lncRNA upstream 18492 9027784 ~ 9028128 (+) True G2294051
TU2623891 lncRNA upstream 24859 9021530 ~ 9021761 (+) True G2294046
TU2623768 lncRNA upstream 138839 8907485 ~ 8907781 (+) True LOC110489365
TU2623820 lncRNA upstream 139483 8906839 ~ 8907137 (+) True G2294001
TU2623907 lncRNA downstream 514 9047480 ~ 9047735 (+) True G2294062
TU2623926 lncRNA downstream 43459 9090425 ~ 9091650 (+) True G2294080
TU2623930 lncRNA downstream 61653 9108619 ~ 9158029 (+) True G2294083
TU2623943 lncRNA downstream 92329 9139295 ~ 9139987 (+) True G2294096
TU2623870 lncRNA downstream 108442 9155408 ~ 9162941 (+) False LOC110489366
XM_036971530.1 mRNA upstream 27151 9005647 ~ 9019469 (+) False LOC110487879
XM_036971528.1 mRNA upstream 27151 9012028 ~ 9019469 (+) False LOC110487879
XM_036971529.1 mRNA upstream 27151 9012043 ~ 9019469 (+) True LOC110487879
XM_036970689.1 mRNA upstream 91670 8942998 ~ 8954950 (+) True stx12
XM_021559793.2 mRNA upstream 104143 8934144 ~ 8942477 (+) True LOC110487875
XM_036971827.1 mRNA downstream 277374 9324340 ~ 9325002 (+) True LOC118946539
trnap-agg-161 mRNA downstream 306851 9353817 ~ 9353888 (+) True trnap-agg-161
trnap-agg-163 mRNA downstream 310125 9357091 ~ 9357162 (+) True trnap-agg-163
trnap-agg-165 mRNA downstream 316083 9363049 ~ 9363120 (+) True trnap-agg-165
trnap-agg-167 mRNA downstream 319357 9366323 ~ 9366394 (+) True trnap-agg-167
TU2623755 other upstream 199368 8844013 ~ 8847252 (+) False G2293943
TU2623757 other upstream 199368 8844013 ~ 8847252 (+) True G2293943
TU2623741 other upstream 251118 8791101 ~ 8795502 (+) False G2293942
TU2623927 other downstream 47826 9094792 ~ 9103186 (+) True G2294081
TU2624382 other downstream 288369 9335335 ~ 9337755 (+) True G2294452
TU2624966 other downstream 1083150 10130116 ~ 10131651 (+) False G2294925
TU2625098 other downstream 1271886 10318852 ~ 10323588 (+) True LOC118946540
TU2625227 other downstream 1467988 10514954 ~ 10521307 (+) True LOC110487904

Expression Profile