RNA id: TU2623870


Basic Information

Item Value
RNA id TU2623870
length 2705
lncRNA type sense_over
GC content 0.39
exon number 4
gene id LOC110489366
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 9046596 ~ 9162941 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctctctctatatatatatgcagtATCTCTCTAACAGAATGTTGTCAGGTCAAAGCTGATCTCTTTCTACCCCTGGCGCTTGATATTTCTGATCCcccacatttttgtatttttttttatttaaaactctttctctttcactttgAGACGGTGAAAGGAGGCATCTCAGAGACTCGCATTGAGAAGAGGATTGTGATAACTGGAGACACAGAGATTGATCACGACAAGGCTCTGGCCCAGGCTATCAAGGAGGCGAAGGAGCAGCACCCGGACATGTCTGTGACCAAAGTGGTGGTGCACCAGGAAACAGAGATCACCCCCGATTAACCCCAGGCTCACCTTTCCTATGACCAGCTGGGGGCCAAAACTACCACGGCGCCTGAGGAAGGTGAACTCACACACATCCCCCGCCCGCCCTGACCTTCTCAGCTTGTTTCACCGCCATTCCTGCTTGTTTACCTCagagacccccccacccccaccttgggaacagacaccagacacacacaccacaccagacTGGACCGGTCCAACCTGCCAGAAAGAACAAGCTTCACTTTTCAACTATGAACTTTGAACCTCCCAACCAATGGAGTTCAACTGAAGGAAAAGGGAACAAACAGAACTCTCCAAAAAAACTCCCAGAATTCCCTAGGACTACccacaatccctctctctctctctctttcactctcttccaCTCCACTGCCAAATCCCAAACAACCAAACTGGATTTTTGTAAACAATAAAAAATTTGAAAtaaaatattataatttttttcctCTTTCTCCAATTTGTCTGGAGATTTTAACAAGAATTTTCAAAGGACATTTGGTCTTTAAATTGTGTAGAGATTGCAGGGACTTTGTTGATATTTTTCTAAGACTTTTCTTATTGCCGTAATTGGAAGTCAACTTTGAAGGGACTTTTATTCTGAAGTGGGATGATAGCAAGGGATTTTGGGTGATCCCTCTTCAAATCAAACTTTTACAACCAAGTTTGGTTTCATCTCTTGTACAgtacaaaaagttatattttcccTCTCAATGTGaaaagtattttttaaatttaagtgttgaaaatattttatttcatccaaACTTTTTGAGGGGCCCTATTTAAGTCTTTGTCGTCTTTTGAAGATATGACTTCATTATCTATTCGTCTGGAGGATTTTCACATATTTTTTGACTGTTTTAGGTTGTCTTTGTTGTTGTAGttacactgggggggggggggggaaggggcTTCATCAGGACTGAAGGGAGAGAAGCAGTGTATTGACATCACATTTATTATATTATTGACATCCTCTTTTATTTCTGTGTATTCATGCATCATTTTAGATCACCCTGACTTTACAGGTTTGTAGTTAGATGTTTTCACACAGCATTCCAATCACCAGCTACATAACAGTCATTAATTTAAACCGGGCATGGCAGAGCAGTAGAGGCAACTTTACAATGTCCTGCATTAATTTACCTGTATTTCTACTTGTCTACCAAAGGGGGCAGTGTTTACTCATTTAGAGAGATGGACCACTACGCAGAAGAAGTCAGTTGGAGAACACTTCATGCTAAAGGCCAAATTTTTTTAATTGGGGTTGATTCGAGAATCAATGTTAAAGGCCCAATgctgtcaaaaatgtgatttttctgtgttttatatttccactctatgaggttggaatactactgtgaaattgtgaaaattatgaaaatgcccttttagtgtttGAGCCGTTTGAACAGCCCAACTGAAATTTcaacctgttttggtgggatggagttttggcttcATCAGTCAGTTAAttagagttccaaacctctctgccaataacaactcGTTTCCATTTTCCTCCTCCCAACTCAGGCCACGCCCAGACAGCCCTAGCAAAAATTATTGTTTGAGAatttgctctttgctaagaagctatttttgttgatttttttttaccattttaattaaaaaacaatcacagtaaggtattgttacccagaaagtatgtgatattgagataaacatatatattttttaaagagctTAAAAAGTAAACAGAAAGTCTCAATTGGGGATTTTGGGAACACATTCCCTCTGGGAGCCTCTTTGGTGTTCTCCTTTTAGAAGACTACTAGTTACATCAGCACAAAATGAAGTTATTGTTATCCTTATCTGTTTACTCCCATGCCTTTTATCTGTGAAGAATACAAATTTAATTGATCCTCCTGTGACGTACACACTGTCCCTTTAAGAAACAACCCAATATGTAAGCAAAGAGTACGGTACACatagtttttaaatgttttggtcTAGTTTAAAAACATGATGTTGTTTTAGGACACATAATATTACAATGTTCAATATCCAATGTGTTGTAGTTCTTTCAGTGTGTTGTTTATtcaccttcctcttcctcttcttcttcattgTGGCACTCTCTTTTCTACATTGGTGAAGGATGGAGTCTAGGAAGAACCAGCCTATACATCTAAAGTTCATGTTTATTTTGTCATAGTgatatatatctgtctctctctctccctctgtctctctctctctccctctgtctctctctctctccctctgtctctctctctctctctctccctctgtctctctctctctctctctctgtttccctcacTGTTAGAGATAATATGTAATAAAACAGCATCACTAAATAAACACAAATGTAGACACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2623943 lncRNA upstream 15421 9139295 ~ 9139987 (+) True G2294096
TU2623926 lncRNA upstream 63758 9090425 ~ 9091650 (+) True G2294080
TU2623907 lncRNA upstream 107673 9047480 ~ 9047735 (+) True G2294062
TU2623884 lncRNA upstream 108442 9046620 ~ 9046966 (+) False LOC110489366
TU2623903 lncRNA upstream 117003 9038196 ~ 9038405 (+) True G2294058
TU2624336 lncRNA downstream 88129 9251070 ~ 9251285 (+) True G2294410
TU2624338 lncRNA downstream 88606 9251547 ~ 9251752 (+) True G2294412
TU2624348 lncRNA downstream 103815 9266756 ~ 9268052 (+) True G2294421
TU2624375 lncRNA downstream 164509 9327450 ~ 9328654 (+) True G2294448
TU2624377 lncRNA downstream 167318 9330259 ~ 9330708 (+) True G2294449
XM_036971530.1 mRNA upstream 135939 9005647 ~ 9019469 (+) False LOC110487879
XM_036971528.1 mRNA upstream 135939 9012028 ~ 9019469 (+) False LOC110487879
XM_036971529.1 mRNA upstream 135939 9012043 ~ 9019469 (+) True LOC110487879
XM_036970689.1 mRNA upstream 200458 8942998 ~ 8954950 (+) True stx12
XM_021559793.2 mRNA upstream 212931 8934144 ~ 8942477 (+) True LOC110487875
XM_036971827.1 mRNA downstream 161399 9324340 ~ 9325002 (+) True LOC118946539
trnap-agg-161 mRNA downstream 190876 9353817 ~ 9353888 (+) True trnap-agg-161
trnap-agg-163 mRNA downstream 194150 9357091 ~ 9357162 (+) True trnap-agg-163
trnap-agg-165 mRNA downstream 200108 9363049 ~ 9363120 (+) True trnap-agg-165
trnap-agg-167 mRNA downstream 203382 9366323 ~ 9366394 (+) True trnap-agg-167
TU2623927 other upstream 52222 9094792 ~ 9103186 (+) True G2294081
TU2623755 other upstream 308156 8844013 ~ 8847252 (+) False G2293943
TU2623757 other upstream 308156 8844013 ~ 8847252 (+) True G2293943
TU2623742 other upstream 359906 8791101 ~ 8795502 (+) False G2293942
TU2624382 other downstream 172394 9335335 ~ 9337755 (+) True G2294452
TU2624966 other downstream 967175 10130116 ~ 10131651 (+) False G2294925
TU2625098 other downstream 1155911 10318852 ~ 10323588 (+) True LOC118946540
TU2625227 other downstream 1352013 10514954 ~ 10521307 (+) True LOC110487904
TU2626619 other downstream 2122552 11285493 ~ 11290303 (+) True G2296150

Expression Profile