RNA id: trnap-agg-170


Basic Information

Item Value
RNA id trnap-agg-170
length 72
RNA type mRNA
GC content 0.61
exon number 1
gene id trnap-agg-170
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 9375545 ~ 9375616 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgcttagggtgcgagaggtcccgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2624389 lncRNA upstream 28231 9346818 ~ 9347314 (+) True G2294458
TU2624388 lncRNA upstream 30467 9344761 ~ 9345078 (+) True G2294457
TU2624377 lncRNA upstream 44837 9330259 ~ 9330708 (+) True G2294449
TU2624375 lncRNA upstream 46891 9327450 ~ 9328654 (+) True G2294448
TU2624348 lncRNA upstream 107493 9266756 ~ 9268052 (+) True G2294421
TU2624390 lncRNA downstream 3293 9378909 ~ 9379108 (+) True trnap-agg-172
TU2624393 lncRNA downstream 5238 9380854 ~ 9381293 (+) True G2294462
TU2624403 lncRNA downstream 34226 9409842 ~ 9410070 (+) True G2294472
TU2624367 lncRNA downstream 58432 9434048 ~ 9435450 (+) True G2294440
TU2624410 lncRNA downstream 60830 9436446 ~ 9436764 (+) True G2294479
trnap-agg-167 mRNA upstream 9151 9366323 ~ 9366394 (+) True trnap-agg-167
trnap-agg-165 mRNA upstream 12425 9363049 ~ 9363120 (+) True trnap-agg-165
trnap-agg-163 mRNA upstream 18383 9357091 ~ 9357162 (+) True trnap-agg-163
trnap-agg-161 mRNA upstream 21657 9353817 ~ 9353888 (+) True trnap-agg-161
XM_036971827.1 mRNA upstream 50543 9324340 ~ 9325002 (+) True LOC118946539
trnap-agg-172 mRNA downstream 3276 9378892 ~ 9378963 (+) False trnap-agg-172
XM_021559799.2 mRNA downstream 7111 9382727 ~ 9386344 (+) True LOC110487882
XM_036971569.1 mRNA downstream 34697 9410313 ~ 9429688 (+) True LOC110487883
XM_036971409.1 mRNA downstream 114178 9489794 ~ 9532662 (+) True LOC110489367
NM_001124344.1 mRNA downstream 192436 9568052 ~ 9573780 (+) True cck-t
TU2624382 other upstream 37790 9335335 ~ 9337755 (+) True G2294452
TU2623927 other upstream 272359 9094792 ~ 9103186 (+) True G2294081
TU2623755 other upstream 528293 8844013 ~ 8847252 (+) False G2293943
TU2623757 other upstream 528293 8844013 ~ 8847252 (+) True G2293943
TU2623747 other upstream 580043 8791101 ~ 8795502 (+) False G2293942
TU2624966 other downstream 754500 10130116 ~ 10131651 (+) False G2294925
TU2625098 other downstream 943236 10318852 ~ 10323588 (+) True LOC118946540
TU2625227 other downstream 1139338 10514954 ~ 10521307 (+) True LOC110487904
TU2626619 other downstream 1909877 11285493 ~ 11290303 (+) True G2296150
TU2626760 other downstream 2187931 11563547 ~ 11564590 (+) True G2296278