RNA id: XM_036971715.1


Basic Information

Item Value
RNA id XM_036971715.1
length 1756
RNA type mRNA
GC content 0.51
exon number 2
gene id LOC110487884
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 9622027 ~ 9624695 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCAACCCGGAGAAACTGAGAATATGTTATTATTACTCTGATGGGGACAGTCAGACAAGCCTTTTCTGAGATATAACCAACCATCGATATACCGATACACCGAGACACAAGGACAGCATCACGGCATCACTGTCTCCTGAATACACCGTGAACAGAGCTGATTTGGAAGAATCGTGATCAAGGTATTTTTATCAATAGAAGgtgtggTGTGTTTGACCCATAATGACCCAAAATGACTCTGACGTCTGGTTCGAGGAGTCTTCAGGTTCAGGGATGTCTTCACCTCTTTCCCTGCTGGACCAATCAGATCCCACGGCCGTGCCTGAGGCCTCTCCTCTCAGCCTATGGGGAGTGGCACTGTGCGTATCGGGAACTCTCATCGTGTCCGAAAACGCCATCGTAGTGGCTGCCATCTTGGCTACGCCTTCTCTCCGTGCTCCTGTCTTCCTACTCCTCGCCAGCCTGGCATTAGCCGACCTGCTGGCGGGCGTGGCCTTGATCCTCCACTTCCTCTTCCTGTTTTGTGTGGAGCCCACTGATTGGTCGGAGCTGATGACGTCAGGGTTGCTGGCGACATCACTGACGGCCTCCCTCCTCAGCCTGATGGGTGTGGCCCTGGATCGTTACCTGTCTCTAAGCCAAGCCCTCACCTACGGCTCCCGCCACTCGCGCCGCTGTGCCGCTGGTCTTCTGGCACTCGTCTGGCTGGGGTCTTGTCTGATTGGCTCGGGGCCGGTGCTGGGGTGGCACTGCCTCAATGACATCACATCCTGTTCCGTTGCGCGACCCCTGACCCGGACATACCTGTCGTTGCTCTGCGGCGGCTTCCTTCTGGTCGTCATGGTCACGCTGCAGCTGTACACCGGGATATGCCGTGTCGCAAGGAGGCACGCCCACGCCATCGCCACGCAGAGACACTTCCTGCCTGACGACCAATCGTATGCCAGCAAGCACGGGGGCCGGGGTAAGGGACTCTCTCGGCTGTTGTTAGTCCTCGGAGTGTTCGTCAGCTGCTGGACGCCCTTCGCCCTCTACGGTTTGCTGGGCGACGCATCTAGCTCGCCCTTGTATACGTACGCTACGCTAGTGCCGGCGGCAGGGAACTCTCTGCTCAACCCTCTGCTGTATAGCCTGAGGAACAGAGACATACGACTGGTGCTGCTGCATGCCTGCTGTCctcacagacacaacacacacaggccTGTTGATGTGtaggatggacacacacacacacacacacacacacacacagctacattgACTGCCCCATATACGTGAAAAATCAAAAGAGAACATCATCATCACTTGCACTCCAGATAAGAAGCAATGAGAATGTACTGTTCCAGAAGACAGCCATCTTGGAATCAGCTGGAATCAAATGTGACGTACTGTATCATCTTAACATGTGCCTCATCCTCACCTAACATGTAGACCATCCAGTCTGATGCAATCACAGAGGTCCAACGTAATTCATCTGGATCCAACATATTTGCTTTAGGAGCACGGGAAAGTGGGTCTATACAATGATACTATTATAAGATATTATTTTATAAGCCTTTGGATGGTTTGTTGGGACTTATATACTATGCTGCTGTCGGTGAACTCCAGAACACTTAGAAAGGGCACTGTCAAAGGCACTGTGACTATCTCTGAAAAGGTTTCAGTTTGCACAATGTTGTTTTTTATAAAATGTACAAATGTTGTCTTTTTCTACTTCAAAATAAAAGCAAATTTATTTTGTATGCAAAACCTGAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2624647 lncRNA upstream 3801 9618011 ~ 9618226 (+) True G2294661
TU2624629 lncRNA upstream 36841 9584300 ~ 9585186 (+) False G2294649
TU2624631 lncRNA upstream 36841 9584300 ~ 9585186 (+) True G2294649
TU2624612 lncRNA upstream 66886 9549365 ~ 9555141 (+) True G2294636
TU2624606 lncRNA upstream 81433 9539626 ~ 9540594 (+) True G2294632
TU2624650 lncRNA downstream 574 9625269 ~ 9625484 (+) True G2294664
TU2624569 lncRNA downstream 3508 9628203 ~ 9630099 (+) False G2294599
TU2624570 lncRNA downstream 3508 9628203 ~ 9630099 (+) True G2294599
TU2624577 lncRNA downstream 5522 9630217 ~ 9633050 (+) True G2294605
TU2624651 lncRNA downstream 10448 9635143 ~ 9635531 (+) True G2294665
NM_001124344.1 mRNA upstream 48247 9568052 ~ 9573780 (+) True cck-t
XM_036971409.1 mRNA upstream 89365 9489794 ~ 9532662 (+) True LOC110489367
XM_036971569.1 mRNA upstream 192339 9410313 ~ 9429688 (+) True LOC110487883
XM_021559799.2 mRNA upstream 235683 9382727 ~ 9386344 (+) True LOC110487882
trnap-agg-172 mRNA upstream 243064 9378892 ~ 9378963 (+) False trnap-agg-172
XM_021559811.2 mRNA downstream 424501 10049196 ~ 10064026 (+) False LOC110487893
XM_021559812.2 mRNA downstream 424502 10049197 ~ 10064026 (+) True LOC110487893
XR_005041414.1 mRNA downstream 466608 10091303 ~ 10092528 (+) True LOC118946535
XM_036971831.1 mRNA downstream 697338 10322033 ~ 10322722 (+) False LOC118946540
XM_036970862.1 mRNA downstream 779677 10404372 ~ 10427604 (+) True LOC110513484
TU2624382 other upstream 284272 9335335 ~ 9337755 (+) True G2294452
TU2623927 other upstream 518841 9094792 ~ 9103186 (+) True G2294081
TU2623755 other upstream 774775 8844013 ~ 8847252 (+) False G2293943
TU2623757 other upstream 774775 8844013 ~ 8847252 (+) True G2293943
TU2623747 other upstream 826525 8791101 ~ 8795502 (+) False G2293942
TU2624966 other downstream 505421 10130116 ~ 10131651 (+) False G2294925
TU2625098 other downstream 694157 10318852 ~ 10323588 (+) True LOC118946540
TU2625227 other downstream 890259 10514954 ~ 10521307 (+) True LOC110487904
TU2626619 other downstream 1660798 11285493 ~ 11290303 (+) True G2296150
TU2626760 other downstream 1938852 11563547 ~ 11564590 (+) True G2296278

Expression Profile