RNA id: XM_021559812.2


Basic Information

Item Value
RNA id XM_021559812.2
length 4268
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC110487893
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 10049196 ~ 10064026 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGctacaaaaaataacaaaaaaaaaacccatTCCAGTGTTAGCCAATCTGCGACGCAGTTTAAGGACTGTCAAGGGAGGCCATAGCAGCAGCTGGCAAAAATATTGACAGTTTATCAAGCAACGAAACTCGGGATTTGCTGTTTTTGTGACCATAGCTGAGTAACACCGGTTAGGATTGGAAGGTGCAGCCGAGCTAGGGTGTAGTGAAgtcggggagaggaggaggaggggagggtccGGACAGGAGAAAAACAAAGATGTCTGTGTAGTTCAACTAGGCAAATCCTAGCGACCTGTCTGAACATCTCTCTGATTTTTTTCTCCAAAACTGACACGTCCCGGAGGTCCAGTGGATAGCGAGCTGGCAACggggaggagagaaaaaaaaccgTTTACCGACCAGCCGAACCGGGCCGTTATGAACGGCCGCTCATGCGCTGTCACGGCAAATAACTGCGACTTGacaacacaaaaacatctctgACGGGTTGTTTTGTTCTAGCTAGACGAGGGCGAGGGCCGGAGTGTTTTTGTGAGCTTGTTAGCTATAGCAATGTAGCTAGCTGAATATATTCGTTAAAACTGCCAGTCAACAGCGCTACATTTCTATACGAAAACGAccattagaaaaaaaaaaaactattttggaaAATTACTAAAACGTCCGTTTGTTAAATTCAACGCGTATTGCGCAACATTGcttactaactagctagctaactagctaactcaCTAGCTAACGTCCATTCCAGCTGTCCTGGCTTTCCCTTGCCGAGCCTGGGGTCGCTAAAtctgccagctagctaacaggtCGCTAGATTACGCCTGacaaacaccaccaccacccaccatgtCCTCGATGGAAGAGCGTGGTGAGGTGGGCGTCGCGGCGGCTCCAGGCTCCTCAGGCGGCCTGGGGGTTGGTGCGGTGGGGGCAGCTCTGGAGACAGTGGTCGGTGGGCCGTCAATGCAAGAGGAGGTGGGcttccgaagaggagagggaCTCGGGCCCGATTCGGACCCGGACGAGCCGCCGCCCAAGAAGCGGATGAGATTGCCGGAGGGAGAGTCGGGAAAGCTGGAAGAGAGGCTGTATTCAGTGCTGTGCTGCACGGTGTGTTTAGATCTGCCCAAAGCCTCCGTTTATCAGTGCACCAACGGTCACCTGATGTGTGCTGGTTGTTTCATCCACCTGCTGGCTGACTCTCGTCTGAAAGAGGAGCAGGCCACGTGTCCTAACTGCAGgtgtgaGATCACCAAGTCTCTGTGTTGTAGGAACCTGGCTGTAGAGAAGGCTGTGAGTGAGCTGCCCACAGACTGTCCCTTCTGTCTCAAACAGTTCCCTCGCTCCAGCCTAGAGAGGCACCAGAAAGAGGAGTGTCAAGACAGGGTGACGCAGTGTAAGTATAAGCGGATTGGCTGCCCATGGAAGGGACCGTTCCACGAGCTACCGGCCCACGAGGAGGAGTGCTGCCATCCCACCAAGACTGGCACAGAGCTGATGGGCATCCTGGGGGAGATGGACCAGAGCCACAGCAGAGAACTAACCCTTTACAACTCTATATTCTCCCTGCTCTGTTACGAGAAGATAGGCTTCACAGAGGTCCAGTTCAGGCCGTACCGGACAGATGACTTCATCACCCGTCTGTACTATGAGAGTCCTCGTTTCACCGTGTTGAACCAGACCTGGGTACTGAAGGCCAGGGTCAACGACTCTGAACGCAACCCTAACCTCTCCTGCAAACGCACCCTCTCCTTCCAACTCATCCTCAAGagcaagGTGAACTCGGCTATAGAGTGTTCCTTCCTGCTGTTGAAAGGACCGTACGACGACGTGAGGATCAAGCCTGTGATCCACCATCACGCGTTCAGCAACGACACCAACGAGACAGACTACGTCCCCCTGCCCATCACCGACTCTGTGGAGTGTAACAAACTACTGGCCGCCAAGAACATCAACCTACGACTCTTCATCTTCCAGATCCAGAAATAGacaagacgaggaggaggaggagggagaggaccgAGAGAGACGTGTAGAGgacgtgagggagagagaagtttGAGTTTAAAGTGAGACACCACTGATacctctttacacacacacacatacacatacacatacacacacacacacagcccactagACCACATATTGAGAGAGTTAGGGAACCCCACCATTTCAGGTGCTGCTTTTAGTGTTGCTTTGGAGACCGGATGGTGTTGCTAGGGGAATTAATCTGTATGGACTGAGGATGTTGTTACTATGGGGGTGTTAGGGGAGAGGGGGTTGTCACTATGGAGACAGGATGGTGTACCCGTGCAGTTGAGTCGGTCTGACATTTCACCCTTTGACCCCAGAGCCAAAGGTAGCTCATACCCACCAAAGCAGGATGAACCatacgagagtgtgtgtgtgtgtgtgtggtatgatactctgagaaaatgtgtgtgcgtatgtgttcCAAAGATGTGAATGTGAGCTTTTGAACTCTGTTGACCACTCAGCTAGTCTGTCCTATAGAATGGAAGGGTGGGTTACTTGTATACACACACTCTGACCTGCTCCTAGTCTGTTTGATTAGGACAGCCGTCCACTTGGTTCGGAGACCAACCCAGAGCAGAGCCAAGATGGCAGTGTTTTGCATGCTCCTTTTAGTTAGTCCTTCAAAAATGAGTTGTGATTTATATATTTAACCTCAAAAGTTAACTTATaccttatttttttttaaatttatttttaaccCTGAATATTTAAATTCCTTTGAACTTAGCCTTTTTTTTAAAGTTTGGTATTAGTGTGGCTGTGCGCTCGCGTGTGTGTGCACGGTGTTGCTCGCGTGCGTGTGCACGGTGTTGCTCGCGTGCGTGTGCACGGTGTTGCTCGCGTGCGTGTGCACGGTGTTGCTCGCGTGCGTGTGCACGGTGTTGCTCGCGTGAGTGTGCACGGTGTTGCTCGCGTGCGTGTGCACGGTGTTGCTCGCGTGCGTTTGTTTTTTGACAGATGCATTTAGGGCCCTAGTGATCACATCCCTATAAACAGATACTtgcatggccacacacacacacacacacacatacacacacacacaatcaacagACCTCTTAGGCCTGCTCAGAAACCAACatctgtgtatgtatgtttgtgtggacTCCTCCTTCTTCTCTGGTTGGGCCGTGCTAGAACCGGAGAACCCAGAACCCTGAAACGGACCTGAAGGGAACCCCAGCTAGTGTGACAGACTGGGTTTGAATCCAGTTTGTCTGCGTGCCACAAGACCGCGTTAGTCCTCTAAGCTAAATCCCAGGGCATTATCTTGGGGAGGTTCCCCTGTAGGAGGGTGGTTCCCCTGTAGGAGGGTGGTTCCCCTGTAGGAGGGCGGTTCCCCTGTAGTAGGGTGGTTCCCCTCCGGAAGATGGAAAAGAGAACCTGAACGGTCCACCGAGTCAACCCTGTTTCACAGGACTAAGGGCTCGATTCCatcagatccgctttagccaACATCTGCAGAGTGGTTGTTTTGGCGGTCAAATCCACAAGTAAAGCCGGGCATTCccattggctgcacggagtcacattaacagaaatcccatgcagccttgtttacatgttcaacactggaatgtgagatgtagcCTACACTTTGATTTAGGGATGAATGAAATCCTCATTTAGTTGAATGATTTTTTTCAATTTGAGCATAAATATTtccatatagcctacacattctCGTTGTGAACTTCTGCAGTGAAGTGGGGCAGGTGTGGTTTCCTGGCGATGATCGCAAGAACAGCTGCTCAgcgaattattattattatttttttttttgatgGCTCAAACTGAAGTCCCACCGCCAAAACATCCGCTATGCTGGTGTCTACTGACGCCGGTTAACTCATGATCTGATTGTCTAGACCTAGCTCATGACTCTGGTTTTAAATGGGGAGAATCCTGGATGGGACCTTTTGACTTTGGGAACTGGTAATTTGTGTGTGCGTTACTATGGTGACGTGTTTAGAGTGTTTAGAGTTACTTGAATGATGCTGAGATGACGATGTTACTAAAAAGTAGAATCTACTGTGAtggctctgtctctcctcctggcCTATTTAGGTTGAGTATTTCTATAGATCTGACTCCTCCGGGCCTATCTAGgtcttgtatttctgtgttttaatGCTTTTTCGTCTCTATGCCAATAGACTCACTGACTCATCTCACTATGGCTGTACATGTGCCTTTTATTAAAGATCATGGAaactga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2624921 lncRNA upstream 29693 10018654 ~ 10019504 (+) False G2294893
TU2624923 lncRNA upstream 29693 10018654 ~ 10019504 (+) True G2294893
TU2624917 lncRNA upstream 37785 10011115 ~ 10011412 (+) True G2294889
TU2624916 lncRNA upstream 42082 10006890 ~ 10007115 (+) True G2294888
TU2624915 lncRNA upstream 42450 10006541 ~ 10006747 (+) True G2294887
TU2624941 lncRNA downstream 21992 10086018 ~ 10094011 (+) False G2294905
TU2624942 lncRNA downstream 25723 10089749 ~ 10094011 (+) True G2294905
TU2624960 lncRNA downstream 59598 10123624 ~ 10123842 (+) True G2294922
TU2624961 lncRNA downstream 60029 10124055 ~ 10124316 (+) True G2294923
TU2624964 lncRNA downstream 66807 10130833 ~ 10131651 (+) True G2294925
XM_036971715.1 mRNA upstream 424502 9622027 ~ 9624695 (+) True LOC110487884
NM_001124344.1 mRNA upstream 475417 9568052 ~ 9573780 (+) True cck-t
XM_036971409.1 mRNA upstream 516535 9489794 ~ 9532662 (+) True LOC110489367
XM_036971569.1 mRNA upstream 619509 9410313 ~ 9429688 (+) True LOC110487883
XM_021559799.2 mRNA upstream 662853 9382727 ~ 9386344 (+) True LOC110487882
XR_005041414.1 mRNA downstream 27277 10091303 ~ 10092528 (+) True LOC118946535
XM_036971831.1 mRNA downstream 258007 10322033 ~ 10322722 (+) False LOC118946540
XM_036970862.1 mRNA downstream 340346 10404372 ~ 10427604 (+) True LOC110513484
XM_021562146.2 mRNA downstream 373651 10437677 ~ 10441669 (+) False si:ch211-199g17.9
XM_036971832.1 mRNA downstream 402339 10466365 ~ 10490055 (+) True LOC110489372
TU2624382 other upstream 711442 9335335 ~ 9337755 (+) True G2294452
TU2623927 other upstream 946011 9094792 ~ 9103186 (+) True G2294081
TU2623755 other upstream 1201945 8844013 ~ 8847252 (+) False G2293943
TU2623757 other upstream 1201945 8844013 ~ 8847252 (+) True G2293943
TU2623747 other upstream 1253695 8791101 ~ 8795502 (+) False G2293942
TU2624966 other downstream 66090 10130116 ~ 10131651 (+) False G2294925
TU2625098 other downstream 254826 10318852 ~ 10323588 (+) True LOC118946540
TU2625227 other downstream 450928 10514954 ~ 10521307 (+) True LOC110487904
TU2626619 other downstream 1221467 11285493 ~ 11290303 (+) True G2296150
TU2626760 other downstream 1499521 11563547 ~ 11564590 (+) True G2296278

Expression Profile