RNA id: XM_036971831.1


Basic Information

Item Value
RNA id XM_036971831.1
length 690
RNA type mRNA
GC content 0.53
exon number 1
gene id LOC118946540
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 10318805 ~ 10323588 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGGGGTCCATGTCCAGGGTATTGATCAGAGATCAGTAGCGATGGGGGTCCATGTCCAGGGTTTTGATCAGAGATCAGTAGTGGTGGGGGTCCATGTCCAGGGTATTGATCAGAGATCAGTAGTGGTGGGGGTCCATGTCCAGGGTATTGATCAGAGATCAGTAGCGATGGGGGTCCATGTCCAGGGTATTGATCAGAGATCAGTAGCGATGGGGGTCCATGTCCAGGGTATTGATCAGAGATCAGTAGTGGTGGGGGTCCATGTCCAGGGTATTGATCAGAGATCAGTAGCGGTGGGGGTCAATGTCCAGGGTATTGATCAGAGATCAGTAGCGATGGGGGTCCATGTCCAGGGTATTGATCAGAGATCAGTAGCGATGGGGGTCCATGTCCAGGGTATTGATCAGAGATCAGTAGCGATGGGGGTCCATGTCCAGGGTATTGATCAGAGATCAGTAGCGATGGGGGTCCATGTCCAGGGTATTGATCAGAGATCAGTAGCGATGGGGGTCCATGTCCAGGGTATTGATCAGAGATCAGTAGTGGTGGGGGTCCATGTCCAGGGTATTGATCAGAGATCAGTAGTGGTGGGGGTCCATGTCCAGGGTATTGATCAGAGATCAGTAGCGATGGGGGTCCATGTCCAGGGTATTGAGAGATCAGTAGTGGTGGGAGGTGTCAGACCGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2625071 lncRNA upstream 15737 10305029 ~ 10306296 (+) False G2294996
TU2625073 lncRNA upstream 15737 10305029 ~ 10306296 (+) False G2294996
TU2625072 lncRNA upstream 15737 10305647 ~ 10306296 (+) True G2294996
TU2625064 lncRNA upstream 42133 10279528 ~ 10279900 (+) True G2294991
TU2625033 lncRNA upstream 71713 10229834 ~ 10250320 (+) True G2294962
TU2625114 lncRNA downstream 4212 10326934 ~ 10392171 (+) True G2295009
TU2625115 lncRNA downstream 4804 10327526 ~ 10363476 (+) True G2295010
TU2625189 lncRNA downstream 93427 10416149 ~ 10416526 (+) False G2295044
TU2625192 lncRNA downstream 93427 10416149 ~ 10416526 (+) True G2295044
TU2625149 lncRNA downstream 107959 10430681 ~ 10431656 (+) False G2295030
XR_005041414.1 mRNA upstream 229505 10091303 ~ 10092528 (+) True LOC118946535
XM_021559811.2 mRNA upstream 258007 10049196 ~ 10064026 (+) False LOC110487893
XM_021559812.2 mRNA upstream 258007 10049197 ~ 10064026 (+) True LOC110487893
XM_036971715.1 mRNA upstream 697338 9622027 ~ 9624695 (+) True LOC110487884
NM_001124344.1 mRNA upstream 748253 9568052 ~ 9573780 (+) True cck-t
XM_036970862.1 mRNA downstream 81650 10404372 ~ 10427604 (+) True LOC110513484
XM_021562146.2 mRNA downstream 114955 10437677 ~ 10441669 (+) False si:ch211-199g17.9
XM_036971832.1 mRNA downstream 143643 10466365 ~ 10490055 (+) True LOC110489372
XM_036971644.1 mRNA downstream 184371 10507093 ~ 10509282 (+) True LOC110489373
XM_021559822.2 mRNA downstream 186742 10509464 ~ 10521398 (+) False LOC110487904
TU2624966 other upstream 190382 10130116 ~ 10131651 (+) False G2294925
TU2624382 other upstream 984278 9335335 ~ 9337755 (+) True G2294452
TU2623927 other upstream 1218847 9094792 ~ 9103186 (+) True G2294081
TU2623755 other upstream 1474781 8844013 ~ 8847252 (+) False G2293943
TU2623757 other upstream 1474781 8844013 ~ 8847252 (+) True G2293943
TU2625227 other downstream 192232 10514954 ~ 10521307 (+) True LOC110487904
TU2626619 other downstream 962771 11285493 ~ 11290303 (+) True G2296150
TU2626760 other downstream 1240825 11563547 ~ 11564590 (+) True G2296278
TU2626940 other downstream 1583985 11906707 ~ 11908666 (+) False LOC110487932
TU2626989 other downstream 1592474 11915196 ~ 11918140 (+) False G2296450

Expression Profile