RNA id: XM_036971392.1


Basic Information

Item Value
RNA id XM_036971392.1
length 1851
RNA type mRNA
GC content 0.55
exon number 8
gene id LOC110487905
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 10541656 ~ 10568730 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCGAGCTCTCATTCCACAAATGTTTCGCGCTCTCTCCTCTCATtaaactcactcactctcccggTCGCTGTCTCTGTCCGGGAAGGTTGCTTTCAGCAAAACCGCCTGTTGGGATTCATTTCAGTGGTGAGCTACAAACAGACACGCTTTCCTGCTGTTTTCTGTCTATCCCGGACGTCTGCAGTATATTCGTGTGTTTGCGAGCCTGCTGTGTGTTTATACTATTATAACGGAATACACTCGAATCTTCTCCCTGTGAAGAAAGAGGCGACGGACCGCCTGAACTCAACTAGCCGCTAAAGTCTCATCTCGGCGGGGGTCTTGTTTTGTGTTTAACGGAGGACCCTGGTTCTGAGAACCCCCACAAGATGGAGAAGTTAGAGAAGGGAATCAAGCCAGTGGAAGAGTGTGAATCTCCCGAGGACGACGTGGTTGACCCCCGGATCCAGgactGTCGTCAGAGGTTCCGCACGGTGCTGGTGGAAGCCACAGTGAAGCTGGATGAGCAGGTGAAGAGGATCGGCAGAGATGTAGAAGACTCCAAACCTTACTGGGAGGCcaggagagtggccagacagGCCCAGCTGGAGGCCCAGAGGGCGACAGGGGAGTTCCAGCGTGCGGTGGAGATCCTGGGGGCGGCTAAAGAGACCATCGCCCTGGCAGAGGAGAGACTCCTGGAAGAGGACAGCAGACAGTTTGACTCAGCCTGGCAGGAGATGCTCAACCACGCCACCAACAGGGTGATGGAGGCGGAGATGACGAGGACTCGTAGCGAATTAGAGCACAGAAAGACGGCGAACCAGTACAACGCCTGCATCAGTCATATGAGACAGCTGGAGAAGAAACTCAAACGCACCATCAACaagtccagGCCATATTTTGAACTGAAGGCGAAATACTACCTAAAACTGGAGcaACTAAAACGTTGCGTAGACGAGCATCAGGCGAAACTGACCGTCGCCAAGGCAGACTACCGCACAGCACTGCGTAACCTAGAGACCATCTCAGAGGAGATCCACGCCCGGCGACGCTCCATCACCATGGGAACCAGAGGGAGGGGCGTGGGGGCCGAGGGTGAGGGAGACCATGAGGACATTACCAACTTCAAGATGGAGTCAGACGGACTGTCCATGGTGTCTGTGACGTTTGATGAAGAAGGAGGATCAGAGGAAGAGACCGAATCACACTCCACTTCCGCTCCCCTCGACATGACCTCCTCCTCccatcatccctcctcctccttcttcaccCCCTCTGCCTACCtctcctctgccccctctctcctctcctcgtcctGTCCCAGTACCACGGAGGGACCCAGTCCTGGCGGCTGGCTAAGCCCAGAGTCGAGGTGTGGTTCAGGGCATGACTGTACTCACCTCGGCCCCCGTTCCCAGTGCAGTGGGGCCTCCTCCCCAGACCCAGACTGCGACCAAGAgagaggggacagagcagagggagcagAGCAGAAGTCGGGTCTGGGTAAGCTGACCCTGACCATAACACACCCACTACATCCCGGGAAGGATGACCCCAAAGGTGACCCTAAGACGACCTCTAGCCCCACACCCCACAACCAATAGCCCTGTTCCCATCATCCTCCTGACCAACAGCGGATAACGGACAGAAGACCTCACCTCTCACATCGTATCATTGACTCATGACCTTTAAACCTGAACTCTGAGGCTTTCTATGGACTTTAGTGTTTATGTTCACCCCAGAGGGAAATCTGAAATCAGCCCCTATTCCATACATAGGAAATAAGGAATAGTGGAAATCAGTGGAGGCTGATGGGAGTAGCtgtaggaggactggctcattgtaatggctggaatggaatgaatgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2625254 lncRNA upstream 13578 10527119 ~ 10528078 (+) True G2295082
TU2625234 lncRNA upstream 15771 10524658 ~ 10525885 (+) False G2295080
TU2625235 lncRNA upstream 15771 10524658 ~ 10525885 (+) False G2295080
TU2625236 lncRNA upstream 15771 10524658 ~ 10525885 (+) False G2295080
TU2625237 lncRNA upstream 15771 10524658 ~ 10525885 (+) False G2295080
TU2625245 lncRNA downstream 117 10568847 ~ 10572244 (+) True G2295081
TU2625275 lncRNA downstream 26704 10595434 ~ 10598111 (+) False G2295101
TU2625277 lncRNA downstream 26704 10595434 ~ 10598111 (+) False G2295101
TU2625278 lncRNA downstream 26704 10595434 ~ 10598111 (+) False G2295101
TU2625279 lncRNA downstream 26704 10595434 ~ 10598111 (+) True G2295101
XM_021559822.2 mRNA upstream 20258 10509464 ~ 10521398 (+) False LOC110487904
XM_021559821.2 mRNA upstream 20258 10514909 ~ 10521398 (+) False LOC110487904
XM_036971644.1 mRNA upstream 32374 10507093 ~ 10509282 (+) True LOC110489373
XM_036971832.1 mRNA upstream 51601 10466365 ~ 10490055 (+) True LOC110489372
XM_021562146.2 mRNA upstream 99987 10437677 ~ 10441669 (+) False si:ch211-199g17.9
XM_036971416.1 mRNA downstream 9676 10578406 ~ 10586437 (+) True btd
XR_005041388.1 mRNA downstream 97960 10666690 ~ 10669052 (+) False LOC110487909
XM_021559826.2 mRNA downstream 97962 10666692 ~ 10669052 (+) True LOC110487909
XM_021559827.2 mRNA downstream 101518 10670248 ~ 10675600 (+) True polr1f
XM_036971573.1 mRNA downstream 190321 10759051 ~ 10795090 (+) False LOC110489377
TU2625227 other upstream 20349 10514954 ~ 10521307 (+) True LOC110487904
TU2625098 other upstream 218068 10318852 ~ 10323588 (+) True LOC118946540
TU2624966 other upstream 410005 10130116 ~ 10131651 (+) False G2294925
TU2624382 other upstream 1203901 9335335 ~ 9337755 (+) True G2294452
TU2623927 other upstream 1438470 9094792 ~ 9103186 (+) True G2294081
TU2626619 other downstream 716763 11285493 ~ 11290303 (+) True G2296150
TU2626760 other downstream 994817 11563547 ~ 11564590 (+) True G2296278
TU2626940 other downstream 1337977 11906707 ~ 11908666 (+) False LOC110487932
TU2626989 other downstream 1346466 11915196 ~ 11918140 (+) False G2296450
TU2629183 other downstream 3061332 13630062 ~ 13630795 (+) True G2298390

Expression Profile