RNA id: XM_036971573.1


Basic Information

Item Value
RNA id XM_036971573.1
length 2719
RNA type mRNA
GC content 0.52
exon number 14
gene id LOC110489377
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 10759051 ~ 10809399 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAGGTTGAAACATTGCAAAGAAGAAACAAATCATTTGTTATTCGAACGGGCTCAGTCTCTCCTGGGACGCAGGATGTGCTGGGGAATGCACAAAACAACAGCTGCTacgatgagagagaaagagagatgtctCGTTTTCACTTTCTCCTTTTCGCTTTAAAGCTTGCCGGGTGATTCTACATGAAGCAGATGAATGGggggaaatttaaaaaaaaatgcaccGATGCACCAACGACCACCGTGCATTCCCGGCGCTGCTTCTTGTTAGCGCGGACGCAAGGTATTTCCCGGTTGATTATCGGATAGTGTCAGTAGTAGCCTGTGACCGGAGCTGCTGCTGGTGTCTCGACTACAAGCCTGCTCCTGGTGTGGATATGACTTCCTGGCTACGTAAATACGACAATCCTGTGCTGCTCTTCCTGCTTTTGGCCGCTAACATCACCAGCGGGAGCTCTCATTCCGGTGAGAGTGTGTGTTCGTCTCCTCCTGTCTCATCATGTTCAGAGTGCCTCCAACGCGGACCACGGTGTGCCTGGTGCTTTCAGGAgCGTTTCCTGGATGGAGCTGAGGTGGGAGAGCGCTGTGACCTGGCAGTGACCCTGGCCAGGAGGGGGTGTGGCCTAGAATTCATAGAGCATCCAGAGGTTATGGTGGAGGTCAACCCTACGACCAGCAGAACCCAGGTTTCACCTGGAGAGATCACACTCACACTCCAACCAGGTGCTGAGGCCAGTGTGGTAGTAGCAGTACAACAGTTAGAGAGGTATCCTGTTGATCTGTACTACCTGGTGGACGTATCAGCATCCATGCAGGACAACCTGGACCAGCTGAAGAAGGTGGGCGTGGCCTTGTCCACCCGTATGAGAGAACATTCCAGTGATCTGCGCCTGGGGTTCGGCTCCTTTGTCGACAAAAATGTCTCACCCTACATCAACGTACACCCCTCCAAGATAAACAACCCCTGCAGTGACTACGAGGTGAAGTGTCTTCCAGCTCATGGCTTCCACCATGTTCTTAGTATGACGTCCAACATGTCAGAGTTTACACGCATCATCAAGAGACAGAGGATATCAGGCAACATGGACACACCTGAGGGAGGGCTGGATGCTATGCTGCAAGCTACTGTATGCCAgGGAGAGGTGGGTTGGCGTGGGGAGGCCAAGcgtctgttgttgttgatgacaGACCAGCCTTCTCACCTGGCGTTGGACAGCAGACTGGCTGGTATAGTCACACCCCATGATGGACTCTGTCATCTGGAGAACAGTGTTTATATGAAGAGTTCTAccatgGACCATCCCAGTTTAGGCCTGCTGGCCGAGAAGCTTCTAGAGAACCACATCTATCCTCTCTTTGCTGTGGAACAACTACAATATCAGTGGTATGAGGAGCTGGTCACGTTGCTACCGGGCTCCAGTCTAATGTTCCAGGCTCCCAACCTCATAGACCTGGTAGTGGATGCatacaagaggTTGTTGTCAGTTGTCCAGGTGTCTGTGTCAGTGGAGGACAGAGCGTTCAGTCGTTTTCTGGTCAGTGTCTCTCCTCTTTGTCCGGAAGGATCTGAATCCCACGACCACAGCTGTTCCAATGTCCAGCCCAACCAGACGGTCTACTTCAACATCACCATCGGCCTGCTGTCCTGTCCTGACGATGATGAGGAAGATGACGTGGTCCAGGTCTTCGTCAGGCCCGTGGGTTACAATGAGTCAGTCGTCATCAAGGTTCGATCACGATGTCGCTGTCACCGTTGCCACGACGACGCAACCCACCAGTCGTCTTGTGGAGAGGACACCCCAGACACAGATCATAATAATCAagaagtcaacacacacacacacctctcacacacacacagctctcacacacacacaccggagttGGACCTAGAGCACACACACTCCCAGGAGGGGCCGCGGCAGTGTGGTGCGGAGGCATCACGGGTGGACTGTAGCGgccggggagtgtgtgtgtgtgagaggtgtgtgtgtgagaggaacAGTCTGGGGACGGTGTATGGAACATACTGTCAGATGGACGACTACTCCTGCCCCTACCAACACGAAATACTGTgtggaggacgaggtgtgtgtgtgtccggtgaGTGTGTTTGTGAGGAGGGCTGGACAGGGGAGAGCTGCGGGTGCCCGGTCTCCACGGCAACCTGCCTGCTCAACAACGGGTTGCTATGCAGTGGGcgtggcaggtgtgtgtgtggcaggtgtgtgtgtgatgaccaTCAACATTCTGGAGAGTTCTGTGAGAAATGCCCCACCTGCCACAGCTCCTGTCAGTCACACTGGGGGTGTATAGACTGTCACTTGTCTCACGGTCTGTCTCAGAGAAAGATGGGGCATTGCAACCATACCTGCCCCCCATTGGTGGTTTATGTCAATGATGTCACAGgTGAGGGATGGAGACAGTGTGTTTATATGAAAGACagttcgttctctctttctcctgttaggTGAGGGATGGAGACAGTGTGTTTATATGAAAGACagttcgttctctctttctcctgttaggTGAGGGATGGAGACAGTGTGTTTATATGAAAGACagtttgttctctctttctcctgttaggTGAGGGATGGAGACAGTGTGTTTATATGAAAGACagtttgttctctctttctcctgttaggTGAGGGATGGAGACAGTGTGTTTATATGAAAGACagttcgttctctctttctcctgttaggtgagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2626065 lncRNA upstream 337 10758215 ~ 10758714 (+) True G2295701
TU2626062 lncRNA upstream 4929 10753897 ~ 10754122 (+) True G2295698
TU2625355 lncRNA upstream 52986 10705762 ~ 10706065 (+) True G2295163
TU2625328 lncRNA upstream 63264 10648803 ~ 10695787 (+) True G2295139
TU2625344 lncRNA upstream 89203 10669429 ~ 10669848 (+) False G2295152
TU2626078 lncRNA downstream 2119 10797209 ~ 10797612 (+) True G2295714
TU2626084 lncRNA downstream 11878 10806968 ~ 10807293 (+) True G2295720
TU2626058 lncRNA downstream 19848 10814938 ~ 10816360 (+) True G2295694
TU2626085 lncRNA downstream 22422 10817512 ~ 10817834 (+) True G2295721
TU2626099 lncRNA downstream 36880 10831970 ~ 10908016 (+) False G2295733
XM_021559827.2 mRNA upstream 83451 10670248 ~ 10675600 (+) True polr1f
XR_005041388.1 mRNA upstream 89999 10666690 ~ 10669052 (+) False LOC110487909
XM_021559826.2 mRNA upstream 89999 10666692 ~ 10669052 (+) True LOC110487909
XM_036971416.1 mRNA upstream 172614 10578406 ~ 10586437 (+) True btd
XM_036971392.1 mRNA upstream 190321 10541656 ~ 10568730 (+) False LOC110487905
NM_001124657.1 mRNA downstream 206958 11002048 ~ 11004436 (+) True il6
XM_021559855.2 mRNA downstream 397960 11193050 ~ 11234468 (+) True LOC110487935
XR_005041365.1 mRNA downstream 468442 11263532 ~ 11264866 (+) False LOC118946500
XM_036971459.1 mRNA downstream 758259 11553349 ~ 11656524 (+) False LOC110487925
XM_036971460.1 mRNA downstream 758259 11553349 ~ 11656524 (+) False LOC110487925
TU2625227 other upstream 237744 10514954 ~ 10521307 (+) True LOC110487904
TU2625098 other upstream 435463 10318852 ~ 10323588 (+) True LOC118946540
TU2624966 other upstream 627400 10130116 ~ 10131651 (+) False G2294925
TU2624382 other upstream 1421296 9335335 ~ 9337755 (+) True G2294452
TU2623927 other upstream 1655865 9094792 ~ 9103186 (+) True G2294081
TU2626619 other downstream 490403 11285493 ~ 11290303 (+) True G2296150
TU2626760 other downstream 768457 11563547 ~ 11564590 (+) True G2296278
TU2626940 other downstream 1111617 11906707 ~ 11908666 (+) False LOC110487932
TU2626989 other downstream 1120106 11915196 ~ 11918140 (+) False G2296450
TU2629183 other downstream 2834972 13630062 ~ 13630795 (+) True G2298390

Expression Profile