RNA id: XR_005041365.1


Basic Information

Item Value
RNA id XR_005041365.1
length 1237
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC118946500
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 11262547 ~ 11278404 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTACATCCACATTGAATCGAGGTGAAACTTAACCATTGGGTTTGTGGACGTGTTTACGTTTTGTCTGCCTGAGTTGGTTATCCAGCGGTACGGGCTTCTATTGACAAGACGTCCAACAACAGTCACGTTTCAACAAAGGAATCCTGATTGAATTCTGTTCATTTTAAAACCAAAAAGGTGCCAAAAATGTTTTTGCCAAGAAAGAAACAAAAGTAAAACAACAACATggcaaaaaaacaataaaaacaacaacacattactTTTCATTTTGAAACGCTGAAGCTCAAACCAACATTCATTTTATTAGTTGTTTGTGCAAGAAGTAAATAAGCCAATAAAAACAGACAAGGTCAGCTGGGTGTCCTCCTCCAATGAGGAGGCTTGTCAGAAAGTCACATGACACATTCCCTAAACAGACGTCCAATCTCGAGTGTTACAAAGGAGACCAACACAAGGAAATGGTGGTTGTCAAtagttaccacagtcacaaagtcataaaccccaccTATTTCAACAAATTCTCTTCTTAAAATGGgatttaaacctaaccctaaccgtaatcacactgctaaccgtatgcctaaccttaaagtAAGCTAATTTGTGTTTACATGCATTTTAATCATGTAGCCAatttttactttgtggctgtggtaattaGTGGAAACCGGAAGAGGTCCTATAGACGGGtaggttgtttagcaacaaaaagCACGAgtgcgcaactatggggcaaaacagacggggttggcttagattgttgataacatgtaaactatatttcgtGCCTATTGTTTTTTGAAAACGTAAAtatatttgcacaatgagcacttgctGTCTCTCAaatacagttgttggttagctagctagcaatttgtTTTACCATATTAGCATAGCtgtgacatcagtcaaaacaagacATTGTATCAAGAACAAGTTAAAActtgctgaaacaagccacctaCGATTCCCTACATGACattgtcttgtcattgttgctcgCTGgtcatccagaaccacaacacatGGACTTCTGTCCCTTTGAAGCCCGTAGTGTTCAAGACGTTGTCAGCTAAGCCATCTATTCCGGAAAAGAACCACGGAACCAAGAAACCGCCTCGCGTCTCAACATGTTGGACCCAAGAACGTGCCGGACGCTAGGTGAAATGGAGCAAAGAGTGGAAACACTACGGTTTTCCAAGCAGGCcatatgcaaataaattaatCTGAACaggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2626610 lncRNA upstream 16116 11247083 ~ 11247416 (+) True G2296143
TU2626609 lncRNA upstream 17714 11245613 ~ 11245818 (+) True G2296142
TU2626605 lncRNA upstream 27125 11235687 ~ 11236407 (+) True G2296139
TU2626577 lncRNA upstream 78435 11184808 ~ 11185097 (+) True G2296114
TU2626567 lncRNA upstream 82552 11180756 ~ 11180980 (+) True G2296107
TU2626650 lncRNA downstream 67707 11332573 ~ 11387113 (+) True G2296178
TU2626678 lncRNA downstream 127320 11392186 ~ 11392574 (+) True G2296204
TU2626679 lncRNA downstream 128946 11393812 ~ 11394057 (+) True G2296205
TU2626705 lncRNA downstream 168561 11433427 ~ 11435423 (+) True G2296230
TU2626716 lncRNA downstream 192132 11456998 ~ 11457422 (+) True G2296241
XM_021559855.2 mRNA upstream 29064 11193050 ~ 11234468 (+) True LOC110487935
NM_001124657.1 mRNA upstream 259096 11002048 ~ 11004436 (+) True il6
XM_036971572.1 mRNA upstream 454133 10759053 ~ 10809399 (+) True LOC110489377
XM_036971573.1 mRNA upstream 468442 10759051 ~ 10795090 (+) False LOC110489377
XM_021559827.2 mRNA upstream 587932 10670248 ~ 10675600 (+) True polr1f
XM_036971459.1 mRNA downstream 288483 11553349 ~ 11656524 (+) False LOC110487925
XM_036971460.1 mRNA downstream 288483 11553349 ~ 11656524 (+) False LOC110487925
XM_036971462.1 mRNA downstream 288483 11553349 ~ 11656524 (+) True LOC110487925
XM_021559844.2 mRNA downstream 399134 11664000 ~ 11742813 (+) True LOC110487927
XM_036971057.1 mRNA downstream 550241 11815107 ~ 11841142 (+) False LOC110487931
TU2625227 other upstream 742225 10514954 ~ 10521307 (+) True LOC110487904
TU2625098 other upstream 939944 10318852 ~ 10323588 (+) True LOC118946540
TU2624966 other upstream 1131881 10130116 ~ 10131651 (+) False G2294925
TU2624382 other upstream 1925777 9335335 ~ 9337755 (+) True G2294452
TU2623927 other upstream 2160346 9094792 ~ 9103186 (+) True G2294081
TU2626619 other downstream 20627 11285493 ~ 11290303 (+) True G2296150
TU2626760 other downstream 298681 11563547 ~ 11564590 (+) True G2296278
TU2626940 other downstream 641841 11906707 ~ 11908666 (+) False LOC110487932
TU2626989 other downstream 650330 11915196 ~ 11918140 (+) False G2296450
TU2629183 other downstream 2365196 13630062 ~ 13630795 (+) True G2298390

Expression Profile