RNA id: XM_036971462.1


Basic Information

Item Value
RNA id XM_036971462.1
length 2053
RNA type mRNA
GC content 0.57
exon number 7
gene id LOC110487925
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 11553349 ~ 11656524 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAGAGCTGTCACTCCTCCCCAACGTTTTGCCGGAGAATAGGAAAGGAGTAGGCTTGGTCTGCGTGCAGAGGCAGAATTGCACCGTACTACGTCTGGGAATATTCGTGCACGGTGGAGAACGCGCCTCACAGCTCCTCTGCTTTGAATAGTAGGTTTGTATAAGGGTTTACTAATACTTATCAGTTTTATGTTAATCATTTAATAAATGCGGTTTTTTTTTAGGTGGTGGAGCCTCGCTTAACAAATCCAACGAGTTTCAATTCAACAGTAGCCTAACCGAATGCTATTCATGGATAATCTTCTCCGTTACCATCCTAGGGTGTCTGTGTGATGCCCCCTGCTAGCGGGTCCCCTCCCAGTGTGTGATGCATCATGGCTCCGGTGCTGAGTGGCTTGTGGGAACTGGGGGTCGTGGGGTCAGGGGACGCCACGGCGACATCCTTAGGCAATGTGCAGCTGATGACCATCTCTGTCTTCTTGCTGCTCTCAATGCTACTGCTGCTGTGTGCAGGCTGCCAGGGGCCAAAGAAATCAAATTGCCGCCCAGTGGCCCACGAGAACCTCATGAATGGAgtgtctgagagagagacatttacCGGTAGTCAGTCTGTGGACAGCCCAGGGACTGACCTATTGGTGAGCAGCTCACACAACGGCCCACTAACCAGTggtacagTGTTGACAGACACCCAGGACAGCAGTCCCCAGCCCTCTGAGGAGATGCTGTCCAGTCAGTCTGAGCTGCGGAGCTCCAAGTGTCCCCAGGACCGCGAGCTGCCCAGCATCCCACCCAACAGCACCCTGGAGGGGATGGGATCTTCCAGCggaccccttctccctccctctggagACGGCACCTACGAGgtggtgaaggagagaggcGGCGACTTGACGGCGTCCCGTGACGTGAGCGTTGAAGACTCCCTGTACGAGACGGTCAAAGAGCTGAAGGACCATCCAGGGAGCCTGGCTGCAGGTCTCCTCAACGGAGACGGTACTATGTCCCCCCTCAGCCCTGATGACAATGAAAtttcccaccaccaccaccaccacaaccacctcCCACCTCCCAACAACCCTCCAGCCCTCCACAACGGCCACCTCAGCCCTGGCTCCCCAGAGCGGGGGCCCCTGTGCGCGGGAGTGGAGTACGCCTCGGTGGATCTCAACAAGAAGAGCCGTTACAGTGCAGACCTGGAGGCCAGGCGCTCAGCCACCATCACTGCTGCTGTGAGCCCCACAGAGGAGCCCGAGGAGGAGGACAGACCCCCGCCTGTACCTGACAAGGTGCTGGATGAGAACGACAACCAGCCTACCATGATGGAcgcaggagcggtggtggtacTGGGGGCCGCGCTGCAAAACGGAGAGctgtcaGACATGTACTCCACGGTGGGGAAGCCAGGTCTAgatgtggaggagaaggagagtgactACAGCAGCATTGCTGATATCAAGGGTCTGGTCCCCGAGTATTCCTCCAGTGATCTCTACGCTACCGTCAGGGACATCCACCCCCAGCCCAGAGAGGGGGAGTCAGACCCCCAGGGACCCCCCACAGAGAGCATCGAGCCTGGCTACGAGATCATCCACATCCCTAAGACTGGCAGTGGAGAGGACTTGGGGCTGGGGAACCAGGTTCAGGAGCCAGACTATGAGAGTGTAGGTGAGCTGGCCCTGGGGTTGAACAGGGAGAGCTCCCGTCTCTGACTGCCTATGGACCCTAAAGCCTGAGTTTCTGGGGCCTCACCCTCCACCCCAGCCATTAACCTCACTCCTAGCCTCACCCTCAACCCCAGCCATTAACCTCACTCCTAGCCTCACCCTCAACCCCAGCCATTAACCTCACTCCTAGCCTCACCCTCAACCCCAGCCATTAACCTCACTCCTAGCCTCACCCTCCACCCCAGCCATTAATCTCACTCCTAGCCTCACCCTCCACCCAAGCCATTAACCTCACTCCTAGCCTCACCCTCAACCCCAGCCATTAACCTCACTCCTAGCCTCACCCTCAACCCCAGCCATTAACCTCACTCCTAGCCTCACCCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2626766 lncRNA upstream 4729 11545314 ~ 11548620 (+) False G2296282
TU2626767 lncRNA upstream 6126 11545314 ~ 11547223 (+) True G2296282
TU2626736 lncRNA upstream 9655 11542884 ~ 11543694 (+) True G2296259
TU2626737 lncRNA upstream 10008 11542011 ~ 11543341 (+) False G2296259
TU2626733 lncRNA upstream 52536 11500566 ~ 11500813 (+) True G2296256
TU2626831 lncRNA downstream 87061 11743585 ~ 11747039 (+) True G2296334
TU2626833 lncRNA downstream 103152 11759676 ~ 11761155 (+) False G2296335
TU2626834 lncRNA downstream 103152 11759676 ~ 11761155 (+) True G2296335
TU2626874 lncRNA downstream 106387 11762911 ~ 11763220 (+) True G2296374
TU2626887 lncRNA downstream 108733 11765257 ~ 11767609 (+) False G2296376
XR_005041365.1 mRNA upstream 288483 11263532 ~ 11264866 (+) False LOC118946500
XM_021559855.2 mRNA upstream 318881 11193050 ~ 11234468 (+) True LOC110487935
NM_001124657.1 mRNA upstream 548913 11002048 ~ 11004436 (+) True il6
XM_036971572.1 mRNA upstream 743950 10759053 ~ 10809399 (+) True LOC110489377
XM_036971573.1 mRNA upstream 758259 10759051 ~ 10795090 (+) False LOC110489377
XM_021559844.2 mRNA downstream 7476 11664000 ~ 11742813 (+) True LOC110487927
XM_036971057.1 mRNA downstream 158583 11815107 ~ 11841142 (+) False LOC110487931
XM_021559848.2 mRNA downstream 249681 11906205 ~ 11909631 (+) False LOC110487932
XM_021559850.2 mRNA downstream 275034 11931558 ~ 11959079 (+) False LOC110487934
XM_021559851.2 mRNA downstream 275043 11931567 ~ 11959079 (+) False LOC110487934
TU2626619 other upstream 263046 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 1032042 10514954 ~ 10521307 (+) True LOC110487904
TU2625098 other upstream 1229761 10318852 ~ 10323588 (+) True LOC118946540
TU2624966 other upstream 1421698 10130116 ~ 10131651 (+) False G2294925
TU2624382 other upstream 2215594 9335335 ~ 9337755 (+) True G2294452
TU2626940 other downstream 250183 11906707 ~ 11908666 (+) False LOC110487932
TU2626989 other downstream 258672 11915196 ~ 11918140 (+) False G2296450
TU2629183 other downstream 1973538 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 2096743 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 2357708 14014232 ~ 14015587 (+) True G2298884

Expression Profile