RNA id: TU2626940


Basic Information

Item Value
RNA id TU2626940
length 867
RNA type TUCP
GC content 0.56
exon number 5
gene id LOC110487932
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 11906205 ~ 11910366 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCGAGGTGTACCTGACAGACGCACAGCGACTCGGAGAATTGGGAGACTTGGactttatatatatacactgtagtGTACTCTGAACGAGGGAAAAACAGCAGCGGATTAAAATGAAACGGATTCACGATTTTAGCTCATCGGACAGCGAGCTGGACGAGAACATTGAGGTTGAGAAGGAGAGTGCGGATGAAAATGGgAACGTGATTTCACCCCTTGGGCCGATGTCTCCATCAACAAAAACTCAAGTGAATGCGAGGAAGCGCCGTCGAGGAATCATTGAAAAACGGCGCCGCGACAGAATCAACAACAGCCTCACGGAGCTGCGTAGACTGGTCCCCAGCGCGTTTGAGAAGCAGGGTTCAGCTAAACTGGAGAAAGCAGAGATTCTGCAGATGACGGTGGAACATCTGAAGATGCTTCATGCTGCTGGAGGAAAAGGTTACTTTGATGCCCGTGCTCTGGCCACGGACTACCGAGGTCTGGGTTTCAGGGAGTGTCTGGCTGAGACAGCCCGCTACCTGAGCATCATCGAGGGGCTGGACAGCGCTGACCCCCTGAGGATCCGCCTGGTCTCCCACCTGAATAGCTACACGTCCCAGAGAGAGGCCCTCTCCATCTCTGGGATAGGGCACCTGGCCTGGGGCTCTGCCTTTGCGTCGCCCCCCTCCGCCCAACTGGCCCACCTCCTCCTACGGCAGCAGCACCATCAACATCAGCAGGGGGCGACGTTACAGTTACCACGGAGCGCCTCCAACAGCCCTccgtcatcctcctcttctactccttcatcctcctcctctccgatTGAGAGAGCGCCACGTTCCTCGCCCCATGGCCATGCTCCCAGCAGGCTTAGCGGTGCCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2626975 lncRNA upstream 11848 11891931 ~ 11894859 (+) True G2296443
TU2626936 lncRNA upstream 65609 11839811 ~ 11841098 (+) True LOC110487931
TU2626942 lncRNA upstream 67030 11838834 ~ 11839677 (+) False LOC110487931
TU2626941 lncRNA upstream 67175 11838834 ~ 11839532 (+) False LOC110487931
TU2626887 lncRNA upstream 139098 11765257 ~ 11767609 (+) False G2296376
TU2626934 lncRNA downstream 263 11908929 ~ 11910366 (+) False LOC110487932
TU2626935 lncRNA downstream 263 11908929 ~ 11910366 (+) True LOC110487932
TU2626990 lncRNA downstream 6530 11915196 ~ 11977297 (+) False G2296450
TU2626991 lncRNA downstream 6530 11915196 ~ 11977297 (+) False G2296450
TU2626992 lncRNA downstream 6530 11915196 ~ 11918140 (+) True G2296450
XM_036971057.1 mRNA upstream 65565 11815107 ~ 11841142 (+) False LOC110487931
XM_021559844.2 mRNA upstream 163894 11664000 ~ 11742813 (+) True LOC110487927
XM_036971459.1 mRNA upstream 250183 11553349 ~ 11656524 (+) False LOC110487925
XM_036971460.1 mRNA upstream 250183 11553349 ~ 11656524 (+) False LOC110487925
XM_036971462.1 mRNA upstream 250183 11553349 ~ 11656524 (+) True LOC110487925
XM_021559850.2 mRNA downstream 22892 11931558 ~ 11959079 (+) False LOC110487934
XM_021559851.2 mRNA downstream 22901 11931567 ~ 11959079 (+) False LOC110487934
XM_021559852.2 mRNA downstream 22906 11931572 ~ 11959079 (+) False LOC110487934
XM_021559853.2 mRNA downstream 22906 11931572 ~ 11959079 (+) True LOC110487934
XM_036970833.1 mRNA downstream 74625 11983291 ~ 12112461 (+) False LOC110489380
TU2626760 other upstream 342117 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 616404 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 1385400 10514954 ~ 10521307 (+) True LOC110487904
TU2625098 other upstream 1583119 10318852 ~ 10323588 (+) True LOC118946540
TU2624966 other upstream 1775056 10130116 ~ 10131651 (+) False G2294925
TU2626989 other downstream 6530 11915196 ~ 11918140 (+) False G2296450
TU2629183 other downstream 1721396 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 1844601 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 2105566 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 2298500 14207166 ~ 14223877 (+) False LOC118936620

Expression Profile