RNA id: TU2626935


Basic Information

Item Value
RNA id TU2626935
length 1355
lncRNA type sense_over
GC content 0.39
exon number 3
gene id LOC110487932
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 11906205 ~ 11910366 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCGGCCCTGGGGCATGGAGATAGGGGCTTTCTGAATGATCTTTAACCCCCCTCCACACAGAATAAACTGACCATATAGATCAATAGAGGTCGCACCATCACTATGAACTCAACTCAGTTCACCAGCTGAGAAGGACCTTTCCAAGACAATGTTTTTCTAGACCTTTCCATGGCCAAGACAATGTTTTTCTAGACCTTGCCATGGCCAAGACAAGATTATGTTTTTCTAGACCCTTCCATGGCCAAGACAATGTTTTTCTAGACCTTTCCATGGCCAAGACAAGATTATGTTTTTCTAGGCCTTTCCATGGCCAAGACAAGATTATGTTTTTCTAGGCCTTTCCATGGCCAAGACAAGATGGAGTTTTTCTATCTCACATCCTATAGAGGATTTCTTAGAAATTGtgtttcaaatcaaagtttgttggtcacacacatattttgcagatgttatcgtgggtgtagctaaatgcttgtgtttctagctccaacagtactgTAAtatctagctaaatgcttgtgtttctagctccaacagtaatacctagctaaatgcttatATTTCGAGCTCTAACattaatacctagctaaatgcttatgtttcgagctccaacagtgcagtaatacctagctaaatgcttgtgtttctagctccaatagtactgtaatacctagctaaatgcttgtgtttctagctccaataggactgtaatacctagctaaatgcttgtgtttctagctccaatagtaatacctagctaaatgcttatgttttgagctccaacagtacagtaatacctagccaaatgcttgtgtttctagctccaacagtaatacctagccaaatgcttgtgtttctagctccaacagtaatacctagccaaatgcttgtgtttctagctccaacagtaatacctagctaaatgcttgtgtttctagctccaacagtaatacctagctaaatgcttgtgtttctagctccaacagtgcagtaatacctagctaaatgcttgtgtttctagctccaacagtaatacctagctaaatgcttgtgtttctagctccaacagtgcagtaatacctagccaaatgcttgtgtttctagctccaacagtaatacctagctaaatgcttgtgtttctagctccaacagtaatacctagctaaatgcttgtgtttctagctccaacagtgcagtaatacctagctaaatgcttgtgtagcGAGCTGTTCACTTTTTACATTCTATGATATTATATGATCCATAAAAAGTGGTGGAGGCACAACACTCTTCTCCATTAAAACATTTTGATTGTGAATTAAttaataaataatatataatCTTCAACATATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2626975 lncRNA upstream 14070 11891931 ~ 11894859 (+) True G2296443
TU2626936 lncRNA upstream 67831 11839811 ~ 11841098 (+) True LOC110487931
TU2626942 lncRNA upstream 69252 11838834 ~ 11839677 (+) False LOC110487931
TU2626941 lncRNA upstream 69397 11838834 ~ 11839532 (+) False LOC110487931
TU2626898 lncRNA upstream 141320 11765257 ~ 11767609 (+) True G2296376
TU2626990 lncRNA downstream 4830 11915196 ~ 11977297 (+) False G2296450
TU2626991 lncRNA downstream 4830 11915196 ~ 11977297 (+) False G2296450
TU2626992 lncRNA downstream 4830 11915196 ~ 11918140 (+) True G2296450
TU2627025 lncRNA downstream 74006 11984372 ~ 11987635 (+) True G2296481
TU2627541 lncRNA downstream 100582 12010948 ~ 12011147 (+) True G2296869
XM_036971057.1 mRNA upstream 67787 11815107 ~ 11841142 (+) False LOC110487931
XM_021559844.2 mRNA upstream 166116 11664000 ~ 11742813 (+) True LOC110487927
XM_036971459.1 mRNA upstream 252405 11553349 ~ 11656524 (+) False LOC110487925
XM_021559850.2 mRNA downstream 21192 11931558 ~ 11959079 (+) False LOC110487934
XM_021559851.2 mRNA downstream 21201 11931567 ~ 11959079 (+) False LOC110487934
XM_021559852.2 mRNA downstream 21206 11931572 ~ 11959079 (+) False LOC110487934
XM_021559853.2 mRNA downstream 21206 11931572 ~ 11959079 (+) True LOC110487934
XM_036970833.1 mRNA downstream 72925 11983291 ~ 12112461 (+) False LOC110489380
TU2626940 other upstream 263 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 344339 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 618626 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 1387622 10514954 ~ 10521307 (+) True LOC110487904
TU2625098 other upstream 1585341 10318852 ~ 10323588 (+) True LOC118946540
TU2626989 other downstream 4830 11915196 ~ 11918140 (+) False G2296450
TU2629183 other downstream 1719696 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 1842901 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 2103866 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 2296800 14207166 ~ 14223877 (+) False LOC118936620

Expression Profile