RNA id: XM_036970837.1


Basic Information

Item Value
RNA id XM_036970837.1
length 5509
RNA type mRNA
GC content 0.52
exon number 23
gene id LOC110489380
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 11983291 ~ 12112461 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACAGTGTTCTCACTAGACTCCCTGGTAGCGCCAGAACTGGCTGTAAACAAGCTGACcgaccagccagtcagtcagtctgactcGGAGATCCATATCAGCTTCATATCCTAGCAGGTAGCTTTTCCAGCACCAGAGACTGCCAGGGACAGGCTCTGAAACGGTCCACTACATCCCAGGGATGAGCTCCTGTCTCTGGGATGAGGCAGCGTGGAGCACCGGGTGATGGTGAATGACTAGGACCACGGCACACTGCTGGCACCAGGCCATGGAACTGTCTAGACGGCTGCACTGGATCCGCAACCGGCCCTGGAGGGCCCGGGCCCGCCGCAGGGAGTTCAGCAGAGTGTCATCCCGCGTCCCAGAGATCATGGCGGCCGGAACGCACTCCCCTGGGGGACCCAATGGGATCATCCGGAGCCAATCCTTCGCCGGCTTCAGCACACTGCAGGAGAGACGCTCGCGgtgtaACTCGTTCATGGGGAACTCCGCAGTGCAGAAGAAACCCACGCCCAAGAAGCCCCATCTGTCAGGGCACAAGGCCAGCAGCGGCTCCAGGGAGCCCCAGCCcgagagggtggaggaggtgtATGGGGCCCTTAAACAAGGCTTggatgaGTATCTGGAggtgcaccagacagggctggacAAACTCACCTCTCTGATGAAGGACATGAAGAGGAACTCCAGACTGGTGAGACAGGATGGAGTCCTGTATGACCTTGACAAGCAAATCAAAACCATCGAGAGGTACATGAGGCGGTTGGAGTTTCACATGAGCAAGGTGGATGAGCTGTATGAGGCATTCTGTATCCAGCGCAGGCTGAGGGAGGGAGCCAGTAAGATGAAGCAGGCCTTCTCTGCATCTCCCTCCACCAAGGCCACCAGAGAGAGCATGTCAGAGGTCAACCGCAGATACAAGGAGTACACAGAGaATATGAGCACGTTAGAGGGGGAGCTGGAGAACATGCTGGGGGAGTTCCATATCAAAATGAAAGGTCTTGCTGGTTTTGCTCGTCTCTGTCCAGGAGACCAGTATGAGaTCTTCATGCGGTATGGGCGTCAGCGCTGGAAGCTGAAGGGGAAGATAGAGGTGAACTCCAGACAGAGTTGGGACGGAGAGGAGATGATCTTCACGCCCCTCATCACAGACCTCATCAACATCAAGGTGACGGAGCTAAAGGGCCTGGCCACTCACATCCTGGTGGGCAGTGTGATCTGTGAGACCAAGGATCTGTTCACGGCCATGCCTCAGGTGGTGGCTGTAGACGTTAATGACCTGGGAACCATCAAACTCAACCTGGAGGTCACATGGTTTCCATTCGATGTGGAAGACCTGACCCTGTCTTCAGGCAACGTGAGCAAGGCCACCGCCCTGCAGAGACGGGTGTCTATCTACAGCCAGGGCACTCCAGAGACACCCACCTTCCAGGACCAGTCCTTCTTTtcCACCCTCCCTGATGACGTCTTTGAGAACGGTGGGTGTGGTAACACCGAGTGCAAGcgcctctccttcaccttctCCGATACTTCAGTCTCCTCCCCCAGCCTCGCCCCCGGTCAGTCCAACCCCGAAATCACCGTCACGCCCCCTGAGACCTGCCCCCAGCCCCAAATCCCCAACGTTGAAGTCCCTGTTCGAATACATGCAGATGTAGTGGAAGAGGCAGAGGaaggtgaggaggaagaggagagtcgCAGTAGCAGCGGCAGCGTGAGTACCAGCCTGGTCAGCGAGGAGGCGGAGTCAGAGTGGGAGAGGGCGGAGTCCCAGTGTAACGGAGGATCCGTCTCTCTCTGCTCGGTCGCTCCCGGGGGGGTGTGTCCGGACCTCGCTGGGCCGGACAGGGATGGTGATGAAGATGACAGCTCGGAGCTACTGAAGCCCGTAGAACTTGACACTGAAGAACCAGGCAGCTTGACCAGGCAACTGGTGAGGAGACTGACATCGTCTGACATTCTGCCCGAGGCGGGGGTTCTGAGCTGGGCTGGGGAGGGGAGCCGGGCCTTCCTGGAGAGCAACCTGGAAGAAACCCTGCAGAATCTGCTACTGAGGCTAGAGTCACTGGGACAACGCTGTAGAGAGCTACAGGACCTGGAACAGGAAGTGATGCGCCTGGAGGACCTACTCAAGTGCCGTCTCCCGGGCCACAGGAGCAGGTCGTCCAGCCTCACTCTGATGGTTGAGAGCGCCCTGGAGAGCTTTGACTTCCTCAACACCTCCGACTTTGACGACGATGACACGGGTGATGACCACGCCCTCCAGCGCTCCGTGTTCTTTGACATGGAGGCGGACAGTATCGGACCTGGGGACCCGCAcccagaggtcaggggtcacctGAGTGAAGCCCTGACGGAGGACACCGGGGTGGGCAACAGTGTGGCCGGCAGCCCCCTGCCTCTCACTACGGGCAACGAGAACCTGGACGTGGCCATCGTCATTCACCTGCAGTACTGCGACCATCTCATCCAGCTCCTGTCCAGTGGGGGGAGCCCTTGGCAGCGTCGAGCCCAGCTCCAGAAGCTCTCAGCTCAGACTCAGCTGCTAGAGGAACTGGGAGAGATCAGCACAGAATGCCTGGGGAGCATCACCTCTGCTGCTGACGtgctccCAGGGCTGTCGGAGCGGCCTGCTCAGATGGCTCTGTGGTCGGAGTGTAGTGGTTCTGGTGCACTGTTCCACGCTACGCTGGACCGGGTGCTCAAACACATGCACCACTGCTACACTCGCCCACTGCAGGAGAGACACCCGCACACCGCAGCTGACACAGtGATCCGGCTGGTGGTGAGTGAGATGGTGGACAGGAGTGATCTGGCCTCCTCCCCTACATGCCACCCCCCTTCGGCCCTGTCCCAGGACGTGGGCCCCCCTTCGGCCCTGTCCCAGGAAGTGGTCCCCCCTTTGGCCCGGTCCCAGGACATGGTCACAGTGTTTCAGTTCCACAGCTACGTCTCAGAGCACAGCGTGGAGGACATGGAGGAACACCTATTGCAGGTGGCCAGAGAAGCTGTGTTTGCGGAGGGCCTGAGCTGTGGCGACTCGGAGCGTTGTCTAAAGGAACTGGATGAGGTCTCACACACCGGCCTGTGTCCCCGGCAGCAGACCCTCAGGGCGCTggcttccctcctctcccaccaagACCCCCAGCTCAGCGAGGCTGCAGCTGCCTACATCACCTCTGCTTCCTCACACACACCCTTCAGGTCAAAGGCGGTGGATTGCTACACACAGGCCTTGTGGGAGGCTGGAGTTCAAACCCAAAGGTCTGCCTGTGCAGCTCTTAGCTGTCTACAGgCAGTAGAGAGCCTCCGGGCGGTGGTATCACTGTGCGACTCGGCAGACGAGGAGCTTCGCCATGTTGCCAGAGAAACCCTGCTCACTTTCGGTGAAGAGGGCCGCCTGGCGTATGAGCAGCTGGACACGATGCCCCGAGAGATGGTACGACTGGGGACGCGGCGAGGGAACGCCGTCACCACCGCCTTCTGAAAGCACAGGACTAACTAAATGAACCTAGGAGCCTCACATCCACAGGAGGGGGACGACCCCCCCTAGAACAACCCCCCGCTGCGCCTGTGCTTTGAGCCATGCAGACTGGACATGCGTTTAAATGGACACAGCTAGGGGGAGTGGCCGCATCAATGCAGAGGAGCCCAACTAAACATGGAAGGGCCACGTCTCATCCTTATCAACAGACTGGTGTAAATCCTAACTGTCCATTCTCTGACCACCACTATTAAACCATCTCTCACTGCACAGACAGAGCATCTCTACCATCACAACTTATTATGTTTATCACGGCTGTGTTTGATATATGATATCCTTATATAACTgctattcatttgttttaggaGGTGACGTTCATTAGACAAAAGGTTATTTGCGCTTTTCAAATTACACTGTGTCAGACATGTAAATATAATAGCATTATACTCTGAACTGGATTTATTTGGTCTTATGTACTGTTGAGATTCAGGGATTTTACAGACCGTTTGAACACTTTCTGTCAGAGGGTGCCATGGAAGATAATTTAGGGGACTAATGACAGTCAAATCGCTCGGAAGGAGGTAGTTAAAAGCAACGCTCGCAAGTCCTCGTCAACATGCATAAAGAAGGAAGTCTTTCCCTAGATAGCAGTTACCAGTAAGCAATGTTCTCACTCCAACATGCACAACATGAAGAGAGAGTCATACTTGGACTGCCTTTCAAACGAAGTTCTCTACTCACACATGCCTGGGATCTACATTCAGAGTTTGAATGTCTGCTTGCTGGGAACTGATGAGATTTGATCATGATTTATTTCATTGGAAGCAGGTACGACTGGACTCGAGGAGTGAGTGTGAGTTAGGGATAGTTAGTATGAAAGGAGAATGCACTTTCTCCACAACTGTACAGTGCAGAACCACGGGCCTGTCTAAGGGGATGATGCTTCGAATCGGCAAGGACTGAGGCTATAGCGCTCTGCCTAGCTTTTTATGCCAGTTGTATCTATACTACTGAGTCCGGTGCTTCTTCAGCATGACAACAGTGTTTTTCTCAACTTAATTTATTTACACCACATTTGTGATTctaatatttaattttcatttaCTTTTGAGTAAGAGGGCAGAATGCAGATACTATTTCACATGTAAAAGTTGTATATTTGGTGTTTTTCTTGCTCATGTTTGATTTTTTAAAGTTTCATTAAAAAAAGGACTCATTAACATGGGAATGATCTTGCTTACATAAAATGTTACTGGAAATATATTTTTCCActcttttaaatgtatttgtacatTAAGTAAGATGGATGGCTGGTATTATTTGGAGGATTTACCAACATAATCAGAGAGCGTTTCCCACGCTACTTTATTACGCGAGGAAAGCctaaaaatgaacatttattcTGAAGATATCTTTAACCTGGCCACTACACCCAGGCTCACCTACAAAGAACAACCATAAACAACCATCAGAATTATCATCTTAATCCTGTGACATGAGATCGGCTTCTAACCGCACTGTCCTAAAGCCATAACGATACGAAAAGGTGTGTTTTAGGCGGTAATATGTGAAATAATATTTGTTCTTTTGTATATTAAAGCTTTAAAACGTGTGAAAGTTGTCACTAAAACTGAAGATGGCTTTGAGTTTGGCCTGGCGTATGTTGATCATGGTCTTTATTTTGAGTAACAATGTGCCTCTTTCTCCCATGACGTGAATAGTGTTACAGTATTTTGGTATGATACTCGTCACTTCAACAACTCCTCTAATTAAtggttttttttctttctccatGATGCAGCGGTCTCCATCTTTCTTTGTGCTAAAAGTAACCCGTGATGAATTAATGTTGCCTCTATTCAACTCCCAAGTCAGACTGAACATGTAGACAGAATGATGAAACGTTATGACATTGATCATATTTCATGTAAATACACAGTGAGGACATGTTACATTGCTCCAGTACTGACTGCATTCATTTCCCCCCTGCTCAATGAAAGTGGCAATAAAGTTTATTTTTGCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2626990 lncRNA upstream 5996 11915196 ~ 11977297 (+) False G2296450
TU2626991 lncRNA upstream 5996 11915196 ~ 11977297 (+) False G2296450
TU2626981 lncRNA upstream 21091 11901519 ~ 11962202 (+) True G2296448
TU2627599 lncRNA downstream 6911 12119372 ~ 12120455 (+) False G2296920
TU2627600 lncRNA downstream 6911 12119372 ~ 12120455 (+) True G2296920
TU2627623 lncRNA downstream 63045 12175506 ~ 12176079 (+) True G2296941
TU2627753 lncRNA downstream 122044 12234505 ~ 12235139 (+) True G2297039
TU2627760 lncRNA downstream 126807 12239268 ~ 12301910 (+) True G2297045
XM_021559850.2 mRNA upstream 24214 11931558 ~ 11959079 (+) False LOC110487934
XM_021559851.2 mRNA upstream 24214 11931567 ~ 11959079 (+) False LOC110487934
XM_021559852.2 mRNA upstream 24214 11931572 ~ 11959079 (+) False LOC110487934
XM_021559853.2 mRNA upstream 24214 11931572 ~ 11959079 (+) True LOC110487934
XM_021559848.2 mRNA upstream 73662 11906205 ~ 11909631 (+) False LOC110487932
XM_021559842.2 mRNA downstream 34217 12146678 ~ 12153737 (+) True LOC110487924
XM_021559856.2 mRNA downstream 210410 12322871 ~ 12414149 (+) False col8a2
XR_005041309.1 mRNA downstream 210410 12322871 ~ 12414149 (+) True col8a2
XM_036971819.1 mRNA downstream 312582 12425043 ~ 12472248 (+) False LOC110487937
XM_036971820.1 mRNA downstream 312582 12425043 ~ 12472248 (+) False LOC110487937
TU2626989 other upstream 65153 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 74627 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 418703 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 692990 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 1461986 10514954 ~ 10521307 (+) True LOC110487904
TU2629183 other downstream 1517601 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 1640806 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 1901771 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 2094705 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 2106440 14218901 ~ 14223877 (+) True LOC118936620

Expression Profile