RNA id: XM_021559842.2


Basic Information

Item Value
RNA id XM_021559842.2
length 1771
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110487924
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 12146678 ~ 12153737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGAAGTTGGGTGTTTGACAGCTGAGACAGAAAATAGATCACAGGGACCGCTCTCAAAGAAACGAATAAATAAAGGATAACTACTCAATCATCTGTACAAGCCTGTAACCCAATACACTATGTCAAGGCAATCCAACCGAACCACAGACGGCAAGAAGATGAACTCGGAGCTGTTCACTCTGACGTACGGAGCCCTGGTAACccagctgtgtaaggactatgAGAACGACGAGGAGGTCAACAAACAGCTGGATAAGATGGGATATAATATCGGAGTGCGTCTCATCGAAGACTTCTTGGCGCGATCCAGCATTGGGAGGTGTCAGGATTTCAGAGAAACGGCCGATGTCATCGCTAAGGTGGCGTTTAAGATGTACCTGGGCATCACCCCCAGTGTGACCAACTGGAGCCCAGCAGGGGATGAGTTGTCCCTCATCCTGGAGAGTAACCCCCTGGTGGACTTTGTAGAGCTGCCTGACAACCACAGCTCCCTGGTCTACTCCAACCTGCTGTGTGGGGTACTCCGAGGAGCTCTGGAGATGgtacAGATGGCAGTGGATGTGAAGTTTGCTCAGGACACCCTGAGAGGAGACAATGTCACAGAGATCCGCATGAAGTTCATCAAGAGGATGGAGGAGAACCTTCCGGCCGGAgatgagtgagagaaacagagagagggagaaagttcCACCCTCCACCACTCTTCTCTTCccgctctccatccatcctcaaTCTGATGTCACTCAAggaggaacggagagagagagagagagcgagagagatagagatgtatAATGATAAACACTTGACTGAGAGACTGAAtgaaaagagagagcgacagtCAAGAAATCAAGTCCTTGGGCGTGTCTGAAATCCAtcttcctctccatgtctcctttccttcctctgcACTGGTCTAAATACAAAGGTCTGACAGGTGGAAGTTATATGCGTTTTGCCATATATGATGCGTTTTACATCAGGATGACTTGGCCGGTGACACTGCTTCTTAACGGTCCCAATATCTTGAGAagttgactgctgacatgcaaaacactGTGAGACTAtgtcaacagtggactaatgaaaacaataccaaaagatagtttgGAGTGGAATTAACTTTTAAATGCTTCATAACTACCAGCGATAGTAGTGCAAATAAAGGAGAGGTGGTTTTTGAGATGTACCCACAGAGATGggtagaggactcatctttgccattatagtgtctgtgacggcgccattgaggctacaacccataggaatccccagCCAGTTGACTACTTTGAAATGGCGGAAGCATGGTAGAATAAATCAATgacgctgcccatgctaaaactgCCTTTTTGGCCACTAAAGGGCTCTATCGTTCTCTACGGATGCACCCTTCTGCAGAACTATGACTCCTGACCTTCTGACCCCCCCTTCTCCCCCAACCATTCAACGTTCATCTCTGCTCCTTTGATGAGACACTCCTTGGATACTTCATCTCATATGTTCATTTCCATAATGTTTTTTGATTGACTTGTAATTCTGTTAAGTTCATAAAGTCAAAGTTGATGGTCTCTATTGTGTTGTACGCGGtgataaaaacaaatatatatattcactTTTGTCTTGTCACCTTTTTTAAATGAAAGATCGTCAAGATTCTATTAATATCTATGTGTATAAGATTTATCTGTTGTCATGCTAGATACTGTCACACTGTATGGCAGTGGTAAATGAAGTAGGCTGATGTCATTATTAATAAAGTCATCATGACATA

Function

GO: NA

KEGG:

id description
K20302 TRAPPC3, BET3; trafficking protein particle complex subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2627599 lncRNA upstream 26223 12119372 ~ 12120455 (+) False G2296920
TU2627600 lncRNA upstream 26223 12119372 ~ 12120455 (+) True G2296920
TU2627558 lncRNA upstream 109193 12037284 ~ 12037485 (+) True G2296883
TU2627550 lncRNA upstream 122103 12024325 ~ 12024575 (+) True G2296875
TU2627542 lncRNA upstream 133073 12013292 ~ 12013605 (+) True G2296870
TU2627623 lncRNA downstream 21769 12175506 ~ 12176079 (+) True G2296941
TU2627753 lncRNA downstream 80768 12234505 ~ 12235139 (+) True G2297039
TU2627760 lncRNA downstream 85531 12239268 ~ 12301910 (+) True G2297045
TU2627789 lncRNA downstream 167773 12321510 ~ 12322066 (+) True G2297072
TU2627801 lncRNA downstream 189299 12343036 ~ 12344731 (+) True G2297082
XM_036970833.1 mRNA upstream 34217 11983291 ~ 12112461 (+) False LOC110489380
XM_036970835.1 mRNA upstream 34217 11983291 ~ 12112461 (+) False LOC110489380
XM_036970832.1 mRNA upstream 34217 11983292 ~ 12112461 (+) False LOC110489380
XM_036970834.1 mRNA upstream 34217 11983292 ~ 12112461 (+) False LOC110489380
XM_036970837.1 mRNA upstream 34217 11983293 ~ 12112461 (+) False LOC110489380
XM_021559856.2 mRNA downstream 169134 12322871 ~ 12414149 (+) False col8a2
XR_005041309.1 mRNA downstream 169134 12322871 ~ 12414149 (+) True col8a2
XM_036971819.1 mRNA downstream 271306 12425043 ~ 12472248 (+) False LOC110487937
XM_036971820.1 mRNA downstream 271306 12425043 ~ 12472248 (+) False LOC110487937
XM_036971821.1 mRNA downstream 299925 12453662 ~ 12472248 (+) True LOC110487937
TU2626989 other upstream 228538 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 238012 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 582088 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 856375 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 1625371 10514954 ~ 10521307 (+) True LOC110487904
TU2629183 other downstream 1476325 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 1599530 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 1860495 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 2053429 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 2065164 14218901 ~ 14223877 (+) True LOC118936620

Expression Profile