RNA id: XR_005041309.1


Basic Information

Item Value
RNA id XR_005041309.1
length 4298
RNA type mRNA
GC content 0.50
exon number 4
gene id col8a2
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 12322871 ~ 12414149 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTGCGAGGTGCACAGGCCCTGGTTCTAAGCTGTGGATGTGGGACTGTACAAGCTGAAGTCCCTGCACTTACCTCTCAGCCAAGCCGACTAGAATACCCTGCCAGCCTGtactgtcgctctctctctctctctctctctctccttccctcctagAGTTGGAGCGCTGAGATTTGGAAAGTGCGCCTCAGACCCACTTTTGGTCAGCCTGAAGACTGTACAGAGACGGTTTtccactcctctcccttccctttcgATCCCACTCTCAGTCACTCTCTCACTGCAGAAGCACATGGACTACATTTtctccagagagacagagaaagaagcaaaacaaaaataacatttgttCCACCTGCCATTGGTGAAAATATTAAAATTGTTCTGTTTTTGGACAAACTCGGACCGGCTTTAAAACCAGCGGCATTGCAacgtttatttatatttttattctctTTCGTTCCTTTGAAATTGACTGATCTGATACCATCCTAATTTCTCTGGGAGACATGCGTggctgaaggagaagaggagccAGAGACCAACCTGAAATTAACACCTCGTTGACACCCTCTCACATCCCGTTCCTCCATCTACCATTCATCGCttggaggagagaaaaaaaagTTGCTAGCAGCTAAACCTAGAGCCGGGGAGTCAGATGACCATGCTGTTGGCTCCTGTctgtgtgctgctgctgctggggggCCGTGTCCTTGGAGGAGGCTACCCCCCCATGCCCCAGATGAAGTACATGCAGCCCATGATGAAGGGCCCTGTGGGACCTCCCTTCCGAGAGGGCAAGGGACAGTACCTcgACATGCCACCCATGATGGACGTAAAGGGCGAGCCAGGGCCCCAAGGAAAACCTGGACCTAGAGGCCCAACTGGGCCCTCGGGACTTCCGGGAAAACCAGGGCTGGGGAAACCAGGTCTCAATGGCCAGCCTGGCCTTCAGGGGCCTCCAGGCTTTCCGGGCATTGGGAAGCCAGGACTTCCGGGTCTCCCAGGAAAAGGGGGAATTAAGGGGATGCCTGGGAATAATGGCGAGGTTGGACTCCGGGGTGAACCAGGTCCCAGAGGACTTCCAGGTCAACCAGGTCTCCCCGGCCCAGCTGGCCTGTCTCTTAATGGCAAACCTGGCCTTCCAGGTGGGAGTGGCCAACCTGGGCCTCGTGGAGAACCAGGACAGAAAGGTGGGCCTGGAAATCCTGGGGAGCGTGGACTCAAGGGAGAGAATGGCAATGGGAATCCTGGATTGCCAGGAACCAGGGGCCCCAATGGGCTCAGGGGCCCCCCAGGGCCAGCTGGTAATCAGGGCATGGGAAAACCAGGACTTGACGGGCTTCCTGGTCCTTCTGGGCCTAAAGGGGACCAGGGGCTCCCAGGAGGAATAGGAGAGCCAGGGAAGGCTGGAGGTCCAGGGCTGCAAGGCCAGCCAGGATCCGTTGGATTGGGCAAGCCTGGTAATGATGGATTGCCTGGAGGACCCGGTCCACTTGGGCCTAAAGGTGAGCCAGGACAGAGGGGTTCTCCAGGGTTTCCTGGAGGTCCTGGCTACGGCAAACCTGGTCTACCAGGGACAAAGGGAGACAAGGGCCTTTTCGGGGGACCAGGCGTCCCTGGAGATAAGGGAGAGCCTGGGATGGCGGGACAGCCAGGAGACATGGGCCCAGATGGACAACCAGGACCACCAGGAATACAGGGCCCCATGGGGCTTTCAGGAAAACACGGCATGCCCGGCCTGAAGGGAGAGTTGGGTCCACAGGGGCATCCAGGTCTGCCAGGGATCAGAGGGGACCAGGGTCCTGGTGGTATGTCTGGAAAACCAGGCATTTCTGGAGACAAAGGGCTCCCGGGCCCTAACGGGGCTATCGGAAAACCTGGGCCCAAAGGCGAGGCAGGGCACATAGGCCTGCCAGGAAACCCAGGTCTTTTAGGCAATCCTGGACCAAAAGGGGAGCTTGGGTTTGTTGGGTCTCCAGGACCAAGAGGCCAGTCTGGAATCCCCGGTCTGCAGGGGCCTTCAGGGCCAATGGGGCCACAGGGTATCCCAGGTCTGAAGGGCGAACCTGGGCTGCCGGGTCTTCCAGGTCTGGGCAAGCTCGGAGAAAAAGGAGTTCCAGGTCCCCAAGGTCCCCCAGGAAAGCCAGGCAACTCTGGACTCAACGGCAACCCCGGTCCTCCAGGGCCACCTGGGCCCCCTGGCCCTGCAGGAAACGGACAAACCGGGGTGGCTGGGCTAACAGATTCAGGGCTGGGTGGGGACGAGGTACCAGACGGGAGGAACGGAAAACCACAGTTTGGCCGTGCAGATCTCTCCGCCACCCTGGCACCTGCTTTTACCGCCATCCTCACCACAGCCTTCCCTCCCTCTGGGACGCCCATCAAGTTCGACAGGACCCTGTACAACGGGCAGAATGCCTACAACCCTGCCACCGGTATCTTCACCAGCCCCATGTCTGGCGTCTACTACTTTGCCTACCACGTGCACGTAAAGGGATTCAGTCTGTGGGTGGCACTGTACAAGAACTATGTTCCAGCCACATATACCTACGACGAGTACAAGAAGGGCTACATGGACCAGGCGTCCGGTAGTGCCGTCCTTGAGCTGAAGGAGAACGACCAGGTGTGGATGCAGATGCCCTCGGATCAGGCTAACGGGCTCTACTCCACCGAATACATCCACTCGTCCTTCTCAGGGTTCCTGCTCTGTCCCACATAATGGCCTGCTAGTCAACTATCACCTAGGGTGCCTTCTGATGTCCCTGTATCAAAACACCGGCAGCCAGAATAACACCACCTGTATAATGttatcatcaacaacatcaacaacgaCAGGAAAAGACGTTGTGAACGGAAGATGGAGAATTAAAAAGCAGGAGAAGGATACTTCATGCTGTGCTCTGTTTTTATCTCTTTCTTTAAAAtgtcagtttttttatttttacgtgtttgtttttttagcttatattattataattattattattattgtcataattgttattattattattttgtcatCGTTGTctgtattgttgttgtttattggaTTCGGACTATTAAGTGCCTTACTTTGTCTAAGTAACAGTTATTATGCTGCGTTCATAACTATTTGGGAAGGTGGTAAATACCATTTGGATGCAATCACGTTCTTTGAACTCATTGAGAAACGGCGATTGGCTAACAGCTATCGTGCTTGTAAAATATTATAGTGTTTAAAACCATATTAATAGCttgctttttataaataatgttttgttgttgcatttaactgTCATAAATACTGTTATAATTTCCTTAGTAGGTGACGTTGGAagtcagcatgtgggagaagtcGGAGCTCAGCGATGATAGacgagtttcccactagtaattaccagttagAGGAGCGTtaaagtgttttttttcccccagtcGTGTGTGGTaaataccaccttcccacttggttatgaacgtAGCATTCGACCTACCCATGTGACTGCACATCCTACCCAAATGCTCTGACATCAGTAGGATTAAATCGTCAGAACCTGGGGCTCTGATTGGTTCCCCTGGCTGCAGTCACTTCCTGCACAAAAAACTCCCATTTCCTTCTGTGTGCGCGTCCTTCCTATTTAAATCAATATTTCACATAAAGATGTACcattacacatacagtatgaagAGTATATTCAATAAACAATTCCTTACGTGAAATAATATCCAATACTTTTCactttactttaaaaaaatgttttttaaataccTGTTATAGGGATCGATGGATCATTGTTTATCAGTACGCTCTGATGTTTTGACAGTCAACTTCTAGTTGTCTGTTGGGTGCTAATTTTCTGGTTCTATGAGAGGCCGGTGCTGAAAGCAATGCTGGTCATTCTAGAAGGTGACGGTTTTGGATCATGGCTATGACTTGACCAATAAGAAGTCATTGCTGGTCATTCTAGAAGGTGACGGTTTTGGATCCTGGCTATGACTTGACCAATAAGAAGTCATTGCTGGTCATTCTAGAAGGTGACGGTTTTGGATCATGGCTATGACTTGACCAATAAGAAGTCATTGCTGGTCATTCTAGAAGGTGACGGTTTTGGATCCTGGCTATGACTTGACCAATAAGAAGTCATTGCTCTATCCAACTTGTGTAAGATCCACACAAAGCAGGGGACACATAGAGACAGCAGTATTAAACATCCAAGAGTAACCATGCTTTCCCCCGTTTCCTCTTCTTTGACAAAGCATCAATAGTAACCAGTAACCTAAAGAAttataaatactgtatatagaacacattaaata

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
K23455 COL8A; collagen type VIII alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2627789 lncRNA upstream 805 12321510 ~ 12322066 (+) True G2297072
TU2627760 lncRNA upstream 20961 12239268 ~ 12301910 (+) True G2297045
TU2627753 lncRNA upstream 87732 12234505 ~ 12235139 (+) True G2297039
TU2627623 lncRNA upstream 146792 12175506 ~ 12176079 (+) True G2296941
TU2627600 lncRNA upstream 202416 12119372 ~ 12120455 (+) True G2296920
TU2627819 lncRNA downstream 3793 12417942 ~ 12418209 (+) True G2297096
TU2627851 lncRNA downstream 49889 12464038 ~ 12465088 (+) True G2297127
TU2627858 lncRNA downstream 64835 12478984 ~ 12482894 (+) True G2297133
TU2627871 lncRNA downstream 81871 12496020 ~ 12498578 (+) True G2297146
TU2627891 lncRNA downstream 116341 12530490 ~ 12569590 (+) True G2297165
XM_021559842.2 mRNA upstream 169134 12146678 ~ 12153737 (+) True LOC110487924
XM_036970834.1 mRNA upstream 210410 11983292 ~ 12112461 (+) False LOC110489380
XM_036971819.1 mRNA downstream 10894 12425043 ~ 12472248 (+) False LOC110487937
XM_036971820.1 mRNA downstream 10894 12425043 ~ 12472248 (+) False LOC110487937
XM_036971821.1 mRNA downstream 39513 12453662 ~ 12472248 (+) True LOC110487937
XM_036970609.1 mRNA downstream 860071 13274220 ~ 13491588 (+) True LOC118946451
XM_036970608.1 mRNA downstream 1093439 13507588 ~ 13724989 (+) False LOC110487938
TU2626989 other upstream 404731 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 414205 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 758281 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 1032568 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 1801564 10514954 ~ 10521307 (+) True LOC110487904
TU2629183 other downstream 1215913 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 1339118 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 1600083 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 1793017 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 1804752 14218901 ~ 14223877 (+) True LOC118936620

Expression Profile